{"doi":"10.56902/cob.vh.2022.2","title":"Visible Human Male","abstract":"Objects Available for Download Aligned Cryosection Images: moving proximal to distal in the Visible Human sequences of cryosection images, there are some offsets in the transverse plane that require correction before beginning segmentation. The Visible Human Female images contain some challenging offsets. As correction is a time-consuming process, we have made the corrected images available for download. The corrected scans are available in DICOM, TIFF, .mat, and MHD file formats. Aligned and Rescaled CT Images: the Visible Human CT images are useful for segmentation of tissues that are not as clear in the cryosection images. However, the CT images are not precisely aligned with the cryosection images. We have made available the CT images aligned to the cryosection images also with offsets corrected. CT scans are full scans going from the head-to-toes. The corrected scans are available in DICOM, TIFF, and MHD file formats. Original Segmentation Masks: the 3D models were created using ScanIP by the construction of 3D objects from a series of outlines, or masks, of each object. This was a manual process often requiring subjective decisions when the clarity of the images made the detection of tissue borders challenging. Therefore, we have provided the segmentation masks in 3D Slicer for those that wish to check or alter the masks for creation of unique models. The raw segmentation masks are available in 3D Slicer as NRRD files. Additionally, the segmentations are available as binary label maps in MHD, TIFF, and .mat file formats. Raw 3D Models: the raw 3D models created from ScanIP are provided in STL format in the default edge length of ScanIP, approximately 0.33 mm edge lengths. Providing the raw STL models enables others to apply their own preferred means of post-processing of the objects (e.g., smoothing or lofting) starting from their original state. Smoothed 3D Models: the smoothed and resampled STLs from MeshMixer are provided. These geometries are free of issues resulting from segmentation and each geometry was remeshed to the following target edge lengths: muscle 1.5 mm, bone 1.0 mm, cartilage 0.75 mm, ligament 0.75 mm. Segmentation Masks of Smoothed Models: segmentation masks were created from the smoothed and resampled 3D models to enable transverse inspection of the final product in segmentation software 3D Slicer. Final 3D Models: the goal of the project was to provide 3D models of the tissues that could be used in applications without further processing. The final 3D","journal":"Digital Commons - DU (University of Denver)","year":2022,"id":301939,"datarank":0.17881982195440582,"base_score":1.0986122886681096,"endowment":1.0986122886681096,"self_citation_contribution":0.16479184330021646,"citation_network_contribution":0.01402797865418937,"self_endowment_contribution":0.16479184330021646,"citer_contribution":0.01402797865418937,"corpus_percentile":33.62729171501508,"corpus_rank":8579,"citation_count":2,"citer_count":2,"citers_with_citation_signal":1,"citers_with_endowment":1,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.6943,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2022-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":718029,"name":"Donald R. Hume","orcid":"0000-0001-9081-358X","position":1,"is_corresponding":false},{"id":778392,"name":"Landon D. Hamilton","orcid":"0000-0001-6656-4720","position":2,"is_corresponding":false},{"id":208468,"name":"Karen Walker","orcid":null,"position":3,"is_corresponding":false},{"id":993447,"name":"Sean E. Higinbotham","orcid":"0009-0001-3907-6112","position":4,"is_corresponding":false},{"id":347682,"name":"Kevin B. Shelburne","orcid":"0000-0003-3377-2712","position":5,"is_corresponding":false},{"id":993966,"name":"Thor Andreassen","orcid":null,"position":0,"is_corresponding":true}],"reference_count":0,"raw_metadata":null,"created_at":"2026-07-19T00:32:06.309890Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}