{"doi":"10.5281/zenodo.2640873","title":"Frictionless Tabular data package for GC-MS data from Rose Genome article published in Nature genetics, June, 2018","abstract":"This dataset, in the form of a Frictionless Tabular Data Package (https://frictionlessdata.io/specs/tabular-data-package/), holds the measurements of 61 known metabolites (all annotated with resolvable CHEBI identifiers and InChi), measured by gas chromatography mass-spectrometry (GC-MS) in 6 different Rose cultivars (all annotated with resolvable NCBITaxId) and 3 organism parts (all annotated with resolvable Plant Ontology identifiers). The data was extracted from a supplementary material table, available from https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-018-0110-3/MediaObjects/41588_2018_110_MOESM3_ESM.zip and published alongside the Nature Genetics manuscript identified by the following doi: https://doi.org/10.1038/s41588-018-0110-3, published in June 2018. This dataset is used to demonstrate how to make data Findeable, Accessible, Discoverable and Interoperable(FAIR) and how Tabular Data Package representations can be easily mobilized for re-analysis and data science. It is associated to the following project available from github at: https://github.com/proccaserra/rose2018ng-notebook with all necessary information and Jupyter notebooks.","journal":null,"year":2019,"id":6619,"datarank":0.10397207708399181,"base_score":0.6931471805599453,"endowment":0.6931471805599453,"self_citation_contribution":0.10397207708399181,"citation_network_contribution":0.0,"self_endowment_contribution":0.10397207708399181,"citer_contribution":0.0,"corpus_percentile":37.91700569568755,"corpus_rank":716,"citation_count":1,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.9521,"is_oa":true,"file_count":2,"downloads":269,"has_version_chain":false,"published_date":"2019-04-15","fair_score":43.3333,"fair_percentile":42.50219876868953,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":290,"name":"Susanna‐Assunta Sansone","orcid":"0000-0001-5306-5690","position":1,"is_corresponding":false},{"id":289,"name":"Rocca-Serra, Philippe","orcid":"0000-0001-9853-5668","position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":"green","license":"other-oa","views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":47.0,"fair_a":63.0,"fair_i":20.0,"fair_r":43.3333,"fair_zscore":-0.1699,"fair_rationale":{"fair_score":43.33,"has_llm":true,"dimensions":{"F":{"name":"Findable","score":47.0,"criteria":[{"key":"f_has_doi","label":"Has a persistent DOI","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"DOI present","rationale":null},{"key":"f_repository_presence","label":"Indexed in repositories / literature DBs","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"datacite=0, pmcid=False, pmid=False","rationale":null},{"key":"f_persistent_ids","label":"Resolvable scholarly identifiers (OpenAlex)","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no OpenAlex id","rationale":null},{"key":"f_metadata_richness","label":"Rich, machine-readable metadata","kind":"llm","weight":1.0,"fraction":0.75,"signal":null,"rationale":"The dataset is described with structured metadata (Frictionless Data Package), uses resolvable identifiers for metabolites, cultivars, and organism parts, but the description does not include a full machine-readable metadata file like a JSON schema."}]},"A":{"name":"Accessible","score":63.0,"criteria":[{"key":"a_open_access","label":"Open Access / files deposited","kind":"deterministic","weight":1.5,"fraction":1.0,"signal":"Open Access","rationale":null},{"key":"a_retrievable","label":"Free full text retrievable","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"0 OA location(s)","rationale":null},{"key":"a_access_protocol","label":"Clear data/code access protocol","kind":"llm","weight":1.0,"fraction":0.75,"signal":null,"rationale":"The data is accessible via a direct DOI link (10.5281/zenodo.2640873) and the original supplementary material URL, but the access protocol (e.g., authentication requirements) is not stated."}]},"I":{"name":"Interoperable","score":20.0,"criteria":[{"key":"i_linked_data","label":"Linked datasets / DataCite relations","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"linked_datasets=0, datacite=0","rationale":null},{"key":"i_standard_ids","label":"References data via standard accessions","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"accessions=0, trials=0","rationale":null},{"key":"i_standards","label":"Standard formats, vocabularies & identifiers","kind":"llm","weight":1.0,"fraction":1.0,"signal":null,"rationale":"The dataset uses standard formats (Frictionless Tabular Data Package), resolvable identifiers (ChEBI, InChi, NCBITaxId, Plant Ontology), which fully meets the criterion."}]},"R":{"name":"Reusable","score":43.33,"criteria":[{"key":"r_license","label":"Clear, open reuse license","kind":"deterministic","weight":1.5,"fraction":0.0,"signal":"no license","rationale":null},{"key":"r_downloads","label":"Demonstrated reuse (downloads)","kind":"deterministic","weight":0.5,"fraction":1.0,"signal":"downloads=269","rationale":null},{"key":"r_version","label":"Versioned / maintained","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no version chain","rationale":null},{"key":"r_dataset","label":"Classified as a data resource","kind":"deterministic","weight":0.5,"fraction":1.0,"signal":"is_dataset","rationale":null},{"key":"r_reusability","label":"Data-availability statement, license & reproducibility","kind":"llm","weight":2.0,"fraction":0.833,"signal":null,"rationale":"The data has a clear license (implied by the Nature Genetics publication and Zenodo deposit), a data-availability statement pointing to the supplementary material, and reproducibility is supported by GitHub notebooks, but explicit license terms are not stated."}]}},"suggestions":["Explicitly state the license under which the dataset is released (e.g., CC0 or CC-BY) in the description or metadata.","Provide a machine-readable data package descriptor (e.g., datapackage.json) with full metadata fields and schema.","Include a direct download link for the data package itself (not just the GitHub or supplementary zip) in the description.","Specify any access conditions (e.g., no authentication required) in the data access statement.","Add a version number and release date to the dataset description for better tracking of updates."],"model":"deepseek/deepseek-v4-flash","agent_version":"fair_agent_v2","fulltext_source":"abstract_only"},"fair_model":"deepseek/deepseek-v4-flash","fair_agent_version":"fair_agent_v2","fair_fulltext_source":"abstract_only","fair_has_llm":true,"fair_computed_at":"2026-06-18T04:56:58.480282Z","clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}