{"doi":"10.5281/zenodo.17372890","title":"PNGs and Annotations of Brain Extraction Results","abstract":"These are a series of PNGs from the MISTIE (Minimally Invasive Surgery Plus Alteplase for Intracerebral Hemorrhage Evacuation) III trial that were used to evaluate 7 skull stripping methods. We excluded implementations using Docker only or MATLAB due to high-performance computing cluster restrictions. If a Docker solutionwas provided, we attempted to run the code outside the container. The methods were: CTBET from Muschelli et al 2015 Robust CTBET CTBET-UNET CTBET-Docker MindGrab/Brainchop SynthStrip HD-CTBET To evaluate the following methods, we qualitatively visually inspected patients in the MISTIE phase III clinical trial. For all methods other than CTBET-UNET, there should be 5062 scans from 499 patients in the MISTIE phase III clinical trial. The CTBET-UNET trained on images that were 512x512, without any preprocessing done to images, so scans that are do not conform to that fail. CTBET-UNET successfully generated brain masks for 2,425 scans, but failed on approximately 40% of scans, namely those with gantry tilt.","journal":"Zenodo (CERN European Organization for Nuclear Research)","year":2025,"id":587762,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":0.0,"corpus_rank":10062,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.7415,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1503946,"name":"Rushil Srirambhatla","orcid":null,"position":1,"is_corresponding":false},{"id":310877,"name":"John Muschelli","orcid":"0000-0001-6469-1750","position":0,"is_corresponding":true}],"reference_count":0,"raw_metadata":null,"created_at":"2026-07-19T02:59:39.958043Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}