{"doi":"10.5281/zenodo.161719","title":"Rdf Representation Of Rna Metabolism Evolution Data - Version 3 (Diagrammed In Https://Zenodo.Org/Deposit/47641/)","abstract":"Version 3 (replaces http://doi.org/10.5281/zenodo.50496)<br> <br> Protein complexes involved in RNA Metabolism; individual proteins and their orthologues through a wide range of fungal species spanning much of the kingdom (using yeast as the primary seed for orthology search, and using the EMBL-EBI orthologue database to identify orthologues). For each family of orthologues, the protein domain structure is determined, and then the presence/absence of that domain is evaluated in each of the species. 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Wilkinson","orcid":"0000-0001-6960-357X","position":3,"is_corresponding":false},{"id":66248,"name":"Alejandro Rodriguez Iglesias","orcid":null,"position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":"green","license":"other-oa","views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":42.0,"fair_a":63.0,"fair_i":15.0,"fair_r":36.6667,"fair_zscore":-0.5468,"fair_rationale":{"fair_score":39.17,"has_llm":true,"dimensions":{"F":{"name":"Findable","score":42.0,"criteria":[{"key":"f_has_doi","label":"Has a persistent DOI","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"DOI present","rationale":null},{"key":"f_repository_presence","label":"Indexed in repositories / literature DBs","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"datacite=0, pmcid=False, pmid=False","rationale":null},{"key":"f_persistent_ids","label":"Resolvable scholarly identifiers (OpenAlex)","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no OpenAlex id","rationale":null},{"key":"f_metadata_richness","label":"Rich, machine-readable metadata","kind":"llm","weight":1.0,"fraction":0.5,"signal":null,"rationale":"The paper lacks explicit machine-readable metadata; while the title describes RDF representation and a Zenodo deposit is noted, no metadata schema or structured description is provided."}]},"A":{"name":"Accessible","score":63.0,"criteria":[{"key":"a_open_access","label":"Open Access / files deposited","kind":"deterministic","weight":1.5,"fraction":1.0,"signal":"Open Access","rationale":null},{"key":"a_retrievable","label":"Free full text retrievable","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"0 OA location(s)","rationale":null},{"key":"a_access_protocol","label":"Clear data/code access protocol","kind":"llm","weight":1.0,"fraction":0.75,"signal":null,"rationale":"Access is indicated via a Zenodo DOI and a diagram link, but no explicit authentication or access protocol is described; the Zenodo link provides open access."}]},"I":{"name":"Interoperable","score":15.0,"criteria":[{"key":"i_linked_data","label":"Linked datasets / DataCite relations","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"linked_datasets=0, datacite=0","rationale":null},{"key":"i_standard_ids","label":"References data via standard accessions","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"accessions=0, trials=0","rationale":null},{"key":"i_standards","label":"Standard formats, vocabularies & identifiers","kind":"llm","weight":1.0,"fraction":0.75,"signal":null,"rationale":"The paper uses RDF as a standard format and mentions orthologue database identifiers, but does not specify which standard vocabularies or identifiers (e.g., URI schemes) are used."}]},"R":{"name":"Reusable","score":36.67,"criteria":[{"key":"r_license","label":"Clear, open reuse license","kind":"deterministic","weight":1.5,"fraction":0.0,"signal":"no license","rationale":null},{"key":"r_downloads","label":"Demonstrated reuse (downloads)","kind":"deterministic","weight":0.5,"fraction":1.0,"signal":"downloads=973","rationale":null},{"key":"r_version","label":"Versioned / maintained","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no version chain","rationale":null},{"key":"r_dataset","label":"Classified as a data resource","kind":"deterministic","weight":0.5,"fraction":1.0,"signal":"is_dataset","rationale":null},{"key":"r_reusability","label":"Data-availability statement, license & reproducibility","kind":"llm","weight":2.0,"fraction":0.5,"signal":null,"rationale":"A data-availability statement (Zenodo deposit) and license metadata are implied by the Zenodo DOI, but no explicit license, provenance, or reproducibility details are stated in the text."}]}},"suggestions":["Add a structured machine-readable metadata section using schema.org or DCAT to enhance findability.","Explicitly state an access protocol (e.g., HTTP, SPARQL endpoint) and any authentication requirements","Specify the exact RDF vocabularies (e.g., FOAF, OWL) and identifier schemes (e.g., ORCID, UniProt) used.","Include an explicit, human-readable license and a reproducibility checklist for the RDF data and diagrams.","Provide a sample RDF snippet or a link to the full RDF dump for easier reuse."],"model":"deepseek/deepseek-v4-flash","agent_version":"fair_agent_v2","fulltext_source":"abstract_only"},"fair_model":"deepseek/deepseek-v4-flash","fair_agent_version":"fair_agent_v2","fair_fulltext_source":"abstract_only","fair_has_llm":true,"fair_computed_at":"2026-06-18T00:51:13.251065Z","clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}