{"doi":"10.48550/arxiv.2510.09554","title":"scellop: A Scalable Redesign of Cell Population Plots for Single-Cell Data","abstract":"Summary: Cell population plots are visualizations showing cell population distributions in biological samples with single-cell data, traditionally shown with stacked bar charts. Here, we address issues with this approach, particularly its limited scalability with increasing number of cell types and samples, and present scellop, a novel interactive cell population viewer combining visual encodings optimized for common user tasks in studying populations of cells across samples or conditions. Availability and Implementation: Scellop is available under the MIT licence at https://github.com/hms-dbmi/scellop, and is available on PyPI (https://pypi.org/project/cellpop/) and NPM (https://www.npmjs.com/package/cellpop). A demo is available at https://scellop.netlify.app/.","journal":"arXiv (Cornell University)","year":2025,"id":584579,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9467,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1498139,"name":"Nikolay Akhmetov","orcid":null,"position":1,"is_corresponding":false},{"id":1498140,"name":"Tiffany S. Liaw","orcid":null,"position":2,"is_corresponding":false},{"id":52889,"name":"Mark S. Keller","orcid":"0000-0003-3003-874X","position":3,"is_corresponding":false},{"id":1271104,"name":"Eric Mörth","orcid":"0000-0003-1625-0146","position":4,"is_corresponding":false},{"id":13479,"name":"Nils Gehlenborg","orcid":"0000-0003-0327-8297","position":5,"is_corresponding":false},{"id":1197982,"name":"Thomas Chris Smits","orcid":"0000-0002-5486-9890","position":0,"is_corresponding":true}],"reference_count":0,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-07-19T02:59:16.166424Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}