{"doi":"10.48550/arxiv.2307.07528","title":"PatchSorter: A High Throughput Deep Learning Digital Pathology Tool for Object Labeling","abstract":"The discovery of patterns associated with diagnosis, prognosis, and therapy response in digital pathology images often requires intractable labeling of large quantities of histological objects. Here we release an open-source labeling tool, PatchSorter, which integrates deep learning with an intuitive web interface. Using >100,000 objects, we demonstrate a >7x improvement in labels per second over unaided labeling, with minimal impact on labeling accuracy, thus enabling high-throughput labeling of large datasets.","journal":"Archive ouverte UNIGE (University of Geneva)","year":2023,"id":409643,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9452,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1189589,"name":"Tasneem Talawalla","orcid":null,"position":1,"is_corresponding":false},{"id":672150,"name":"Róbert Tóth","orcid":"0009-0003-6205-4135","position":2,"is_corresponding":false},{"id":1189181,"name":"Akhil Ambekar","orcid":"0000-0002-6241-6234","position":3,"is_corresponding":false},{"id":1189590,"name":"Kien Rea","orcid":null,"position":4,"is_corresponding":false},{"id":1189591,"name":"Oswin Chamian","orcid":null,"position":5,"is_corresponding":false},{"id":1189182,"name":"Fan Fan","orcid":"0000-0002-7507-1810","position":6,"is_corresponding":false},{"id":297611,"name":"Sabina Berezowska","orcid":"0000-0001-5442-9791","position":7,"is_corresponding":false},{"id":639079,"name":"Sven Rottenberg","orcid":"0000-0003-2044-9844","position":8,"is_corresponding":false},{"id":237305,"name":"Anant Madabhushi","orcid":"0000-0002-5741-0399","position":9,"is_corresponding":false},{"id":1189592,"name":"Marie Maillard","orcid":null,"position":10,"is_corresponding":false},{"id":237302,"name":"Laura Barisoni","orcid":"0000-0003-0848-9683","position":11,"is_corresponding":false},{"id":63625,"name":"Hugo M. Horlings","orcid":"0000-0003-4782-8828","position":12,"is_corresponding":false},{"id":247031,"name":"Andrew Janowczyk","orcid":"0000-0003-2982-4321","position":13,"is_corresponding":false},{"id":1189180,"name":"C.F. Walker","orcid":"0009-0001-1508-2083","position":0,"is_corresponding":true}],"reference_count":0,"raw_metadata":null,"created_at":"2026-07-19T01:21:27.199694Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}