{"doi":"10.3390/ijms16024306","title":"Comprehensive Analysis Suggests Overlapping Expression of Rice ONAC Transcription Factors in Abiotic and Biotic  Stress Responses","abstract":"<jats:p>NAC (NAM/ATAF/CUC) transcription factors comprise a large plant-specific gene family that contains more than 149 members in rice. Extensive studies have revealed that NAC transcription factors not only play important roles in plant growth and development, but also have functions in regulation of responses to biotic and abiotic stresses. However, biological functions for most of the members in the NAC family remain unknown. In this study, microarray data analyses revealed that a total of 63 ONAC genes exhibited overlapping expression patterns in rice under various abiotic (salt, drought, and cold) and biotic (infection by fungal, bacterial, viral pathogens, and parasitic plants) stresses. Thirty-eight ONAC genes exhibited overlapping expression in response to any two abiotic stresses, among which 16 of 30 selected ONAC genes were upregulated in response to exogenous ABA. Sixty-five ONAC genes showed overlapping expression patterns in response to any two biotic stresses. Results from the present study suggested that members of the ONAC genes with overlapping expression pattern may have pleiotropic biological functions in regulation of defense response against different abiotic and biotic stresses, which provide clues for further functional analysis of the ONAC genes in stress tolerance and pathogen resistance.</jats:p>","journal":"International Journal of Molecular Sciences","year":2015,"id":599986,"datarank":0.6284482113039639,"base_score":4.189654742026425,"endowment":4.189654742026425,"self_citation_contribution":0.6284482113039639,"citation_network_contribution":0.0,"self_endowment_contribution":0.6284482113039639,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":65,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":null,"is_data_producer":false,"deposit_databanks":null,"is_oa":false,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":null,"fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":249675,"name":"Lei Huang","orcid":"0000-0002-1996-944X","position":1,"is_corresponding":false},{"id":1537936,"name":"Yongbo Hong","orcid":null,"position":2,"is_corresponding":false},{"id":476824,"name":"Huijuan Zhang","orcid":"0000-0003-4253-6893","position":3,"is_corresponding":false},{"id":1537937,"name":"Fengming Song","orcid":null,"position":4,"is_corresponding":false},{"id":187122,"name":"Dayong Li","orcid":"0000-0002-0345-9402","position":5,"is_corresponding":false},{"id":347955,"name":"Lijun Sun","orcid":"0000-0002-1579-2253","position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"has_enrichment":true,"resolved":true,"title":"Comprehensive Analysis Suggests Overlapping Expression of Rice ONAC Transcription Factors in Abiotic and Biotic  Stress Responses","abstract":"<jats:p>NAC (NAM/ATAF/CUC) transcription factors comprise a large plant-specific gene family that contains more than 149 members in rice. Extensive studies have revealed that NAC transcription factors not only play important roles in plant growth and development, but also have functions in regulation of responses to biotic and abiotic stresses. However, biological functions for most of the members in the NAC family remain unknown. In this study, microarray data analyses revealed that a total of 63 ONAC genes exhibited overlapping expression patterns in rice under various abiotic (salt, drought, and cold) and biotic (infection by fungal, bacterial, viral pathogens, and parasitic plants) stresses. Thirty-eight ONAC genes exhibited overlapping expression in response to any two abiotic stresses, among which 16 of 30 selected ONAC genes were upregulated in response to exogenous ABA. Sixty-five ONAC genes showed overlapping expression patterns in response to any two biotic stresses. Results from the present study suggested that members of the ONAC genes with overlapping expression pattern may have pleiotropic biological functions in regulation of defense response against different abiotic and biotic stresses, which provide clues for further functional analysis of the ONAC genes in stress tolerance and pathogen resistance.</jats:p>","is_dataset_classified":null,"base_score":0.0,"endowment":0.0,"datacite_reuse_total":0,"file_count":0,"downloads":0,"views":0,"has_version_chain":false,"is_dataset":false,"is_oa":false,"pmid":"25690040","pmcid":"PMC4346958","openalex_id":null,"authors":[],"funders":[{"funder_name":"National Natural Science Foundation of China","grant_id":"Nos. 30971880","title":null},{"funder_name":"National Natural Science Foundation of China","grant_id":"Nos. 31400315","title":null},{"funder_name":"National R&amp;D Project of Transgenic Crops of the Ministry of Agriculture of China","grant_id":"2011ZX08009-003-001","title":null},{"funder_name":"Doctoral degree of Education Ministry of China","grant_id":"No. 20120101110070","title":null},{"funder_name":"the Natural Science Foundation of Jiangsu Province","grant_id":"No. BK20130389","title":null}],"total_grants":5,"fwci":null,"citation_percentile":null,"influential_citations":0,"citation_trend":[],"oa_status":"gold","license":"cc-by","oa_locations":[{"url":"https://www.mdpi.com/1422-0067/16/2/4306/pdf?version=1424163588","host_type":"GOLD"},{"url":"https://www.mdpi.com/1422-0067/16/2/4306/pdf?version=1424163588","host_type":"publisher"},{"url":"https://www.mdpi.com/1422-0067/16/2/4306/pdf","host_type":"publisher"},{"url":"https://doaj.org/article/a90c2f5c49fc4763b0b9df8932a2821a","host_type":"repository"},{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4346958","host_type":"repository"},{"url":"http://dx.doi.org/10.3390/ijms16024306","host_type":"repository"},{"url":"https://europepmc.org/articles/PMC4346958","host_type":"Europe_PMC"},{"url":"https://europepmc.org/articles/PMC4346958?pdf=render","host_type":"Europe_PMC"}],"fields_of_study":["Biology","Medicine","Environmental Science"],"mesh_terms":["Salts","Plant Proteins","Transcription Factors","Gene Expression Profiling","Temperature","Phylogeny","Down-Regulation","Up-Regulation","Droughts","Real-Time Polymerase Chain Reaction","Oryza"],"keywords":[],"sdg_mappings":[],"linked_datasets":[],"clinical_trials":[],"software_tools":[],"database_accessions":[{"name":"geo"}],"source":"live","citation_network_status":"fetched"},"created_at":"2026-07-29T11:55:31.571700Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}