{"doi":"10.32614/cran.package.nprcgenekeepr","title":"nprcgenekeepr: Genetic Tools for Colony Management","abstract":"Provides genetic tools for colony management and is a derivation of the work in Amanda Vinson and Michael J Raboin (2015) &lt;<a href=\"https://pmc.ncbi.nlm.nih.gov/articles/PMC4671785/\" target=\"_top\">https://pmc.ncbi.nlm.nih.gov/articles/PMC4671785/</a>&gt; \"A Practical Approach for Designing Breeding Groups to Maximize Genetic Diversity in a Large Colony of Captive Rhesus Macaques ('Macaca' 'mulatto')\". It provides a 'Shiny' application with an exposed API. The application supports five groups of functions: (1) Quality control of studbooks contained in text files or 'Excel' workbooks and of pedigrees within 'LabKey' Electronic Health Records (EHR); (2) Creation of pedigrees from a list of animals using the 'LabKey' EHR integration; (3) Creation and display of an age by sex pyramid plot of the living animals within the designated pedigree; (4) Generation of genetic value analysis reports; and (5) Creation of potential breeding groups with and without proscribed sex ratios and defined maximum kinships.","journal":null,"year":2020,"id":144875,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9464,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":270817,"name":"Terry M. Therneau","orcid":"0000-0003-1490-6711","position":1,"is_corresponding":false},{"id":614068,"name":"Amanda Vinson","orcid":null,"position":2,"is_corresponding":false},{"id":613890,"name":"R. Mark Sharp","orcid":"0000-0002-6170-6942","position":3,"is_corresponding":false},{"id":613891,"name":"Matthew Schultz","orcid":"0000-0001-5103-4305","position":4,"is_corresponding":false},{"id":614067,"name":"Michael Raboin","orcid":null,"position":0,"is_corresponding":true}],"reference_count":0,"raw_metadata":null,"created_at":"2026-07-18T23:17:48.191325Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}