{"doi":"10.31219/osf.io/y8thv","title":"Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data","abstract":"Multi-omics technologies with single-cell and spatial resolution make it possible to measure thousands of features across millions of cells. However, visual analysis of high-dimensional transcriptomic, proteomic, genome-mapped, and imaging data types simultaneously remains a challenge. Here, we describe Vitessce, an interactive web-based visualization framework for exploration of multimodal and spatially-resolved single-cell data. We demonstrate integrative visualization of millions of data points including cell type annotations, gene expression quantities, spatially-resolved transcripts, and cell segmentations across multiple coordinated views. The open source software is available at http://vitessce.io.","journal":"OSF Preprints (OSF Preprints)","year":2021,"id":213086,"datarank":0.5533319181170905,"base_score":3.6888794541139363,"endowment":3.6888794541139363,"self_citation_contribution":0.5533319181170905,"citation_network_contribution":0.0,"self_endowment_contribution":0.5533319181170905,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":39,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9417,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":52886,"name":"Ilan Gold","orcid":"0000-0002-5823-1026","position":1,"is_corresponding":false},{"id":556228,"name":"Chuck McCallum","orcid":"0000-0003-4039-9768","position":2,"is_corresponding":false},{"id":52899,"name":"Trevor Manz","orcid":"0000-0001-7694-5164","position":3,"is_corresponding":false},{"id":23387,"name":"Peter V. Kharchenko","orcid":"0000-0002-6036-5875","position":4,"is_corresponding":false},{"id":13479,"name":"Nils Gehlenborg","orcid":"0000-0003-0327-8297","position":5,"is_corresponding":false},{"id":52889,"name":"Mark S. Keller","orcid":"0000-0003-3003-874X","position":0,"is_corresponding":true}],"reference_count":57,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-07-18T23:52:31.378994Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}