{"doi":"10.21105/joss.05098","title":"Brainchop: In-browser MRI volumetric segmentation andrendering","abstract":"Brainchop is a web-based tool that allows scientists and clinicians to perform volumetric analysis of structural Magnetic Resonance Imaging (MRI) using pre-trained deep learning models, without the need for technical expertise or setup of AI solutions.It is the first browser-based front-end MRI segmentation tool that can process full brain volumes in a single pass, using the lightweight and reliable Meshnet model (Fedorov et al., 2017) modified to incorporate volumetric dilated convolutions (Yu & Koltun, 2016) for increased accuracy and modest computational requirements.In addition to offering extensibility through an open-source framework, Brainchop also addresses privacy concerns by performing client-side processing and leveraging hardware acceleration across different brands and architectures.","journal":"The Journal of Open Source Software","year":2023,"id":374498,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":4,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9462,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1136483,"name":"Farfalla Hu","orcid":"0000-0002-1816-2011","position":1,"is_corresponding":false},{"id":251013,"name":"Sergey Plis","orcid":"0000-0003-0040-0365","position":2,"is_corresponding":false},{"id":1136482,"name":"Mohamed Masoud","orcid":"0000-0002-5365-242X","position":0,"is_corresponding":true}],"reference_count":8,"raw_metadata":null,"created_at":"2026-07-19T01:16:15.380731Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}