{"doi":"10.21105/joss.02334","title":"SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data","abstract":"Laboratories that run Whole Genome Sequencing (WGS) produce a tremendous amount of data, up to 10 gigabytes for some common instruments. There is a need to standardize the quality assurance and quality control process (QA/QC). Therefore we have created SneakerNet to automate the QA/QC for WGS.","journal":"The Journal of Open Source Software","year":2021,"id":207414,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":4,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9586,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":792983,"name":"Curtis J. Kapsak","orcid":"0000-0002-8735-1190","position":1,"is_corresponding":false},{"id":792984,"name":"Jessica Chen","orcid":"0000-0002-4723-8249","position":2,"is_corresponding":false},{"id":788137,"name":"Henk C. den Bakker","orcid":"0000-0002-4086-1580","position":3,"is_corresponding":false},{"id":793534,"name":"Grant Williams","orcid":null,"position":4,"is_corresponding":false},{"id":324522,"name":"Alyssa Kelley","orcid":null,"position":5,"is_corresponding":false},{"id":793535,"name":"Eshaw Vidyaprakash","orcid":null,"position":6,"is_corresponding":false},{"id":788138,"name":"Lee S. Katz","orcid":"0000-0002-2533-9161","position":7,"is_corresponding":false},{"id":792982,"name":"Taylor Griswold","orcid":"0000-0001-9084-7958","position":0,"is_corresponding":true}],"reference_count":3,"raw_metadata":null,"created_at":"2026-07-18T23:51:49.715594Z","pmid":"35360664","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}