{"doi":"10.18131/ngerj-6bp65","title":"Supplementary Data for: The Transcription Factor TCF21 is Necessary for Adoption of Cell Fates by Foxd1+ Stromal Progenitors during Kidney Development","abstract":"Supplementary Materials Supplementary Figure Legends Supplementary Methods Suppl Fig. S1: Flow cytometry analysis of single-cell suspensions from E14.5 mouse kidneys for scRNA-seq Suppl Fig. S2: Single-cell RNA-seq analysis of Foxd1GFP+ sorted cells from control and Tcf21-cKO kidneys Suppl Fig. S3: Single-cell RNA-seq analysis of stromal cells Suppl Fig. S4: Stromal subpopulation markers for module scores Suppl Fig. S5: Comparison of stromal cells between Tcf21-cKO and controls Suppl Fig. S6: Elbow plot, cluster tree, and proportion graph by sex for stromal clusters Suppl Fig. S7: Stromal Endomucin+ cells in E18.5 Tcf21-cKO kidneys Suppl Fig. S8: Single-cell RNA-seq analysis of E18.5 control and Tcf21-cKO kidneys Suppl Fig. S9: Lineage annotation of single-cell ATAC-seq analysis at E14.5 Suppl Table S1: E14.5 scRNA-seq a. All cluster markers. b. Cell type markers Suppl Table S2: E14.5 scRNA-seq a. Stromal subpopulation markers. b. Marker overlap with Combes et al Suppl Table S3: E14.5 scRNA-seq a. Downsampled cell numbers by stromal cluster by sample b. Differential gene expression output c. GO term output up-regulated d. GO term output down-regulated Suppl Table S4: a. Monocle module genes. b. Number of cells expressing modules Suppl Table S5: E18.5 scRNA-seq a. All cluster markers b. Stromal subpopulation markers c. Emcn+ mutant markers Suppl Table S6: Matrisome associated gene module Suppl Table S7: E14.5 scATAC-seq a. Stromal subpopulation markers based on gene activity scores Suppl Table S8: E18.5 bulk RNA-seq a. DEGs (Tcf21-cKO vs Control) b. GO Term up-regulated c. GO Term down-regulated Suppl Table S9: Significant ligand-receptor interactions from CellChat","journal":"Galter Health Sciences Library, Northwestern University","year":2025,"id":586221,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":0.0,"corpus_rank":10062,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.8506,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1500718,"name":"Yacu, George S.","orcid":null,"position":1,"is_corresponding":false},{"id":1500719,"name":"Khan, Mohammad D.","orcid":null,"position":2,"is_corresponding":false},{"id":1500720,"name":"Zhou, Yalu","orcid":null,"position":3,"is_corresponding":false},{"id":1500721,"name":"Gadhvi, Gaurav","orcid":null,"position":4,"is_corresponding":false},{"id":1500722,"name":"Ward, Sarah E.","orcid":null,"position":5,"is_corresponding":false},{"id":1500723,"name":"Sayed, Mohammed","orcid":null,"position":6,"is_corresponding":false},{"id":1500724,"name":"Gomez, R. Ariel","orcid":null,"position":7,"is_corresponding":false},{"id":1500725,"name":"Sequeira-Lopez, Maria Luisa S.","orcid":null,"position":8,"is_corresponding":false},{"id":1500726,"name":"Park, Joo-Seop","orcid":null,"position":9,"is_corresponding":false},{"id":1500727,"name":"Lim, Hee-Woong","orcid":null,"position":10,"is_corresponding":false},{"id":1500728,"name":"Quaggin, Susan E.","orcid":null,"position":11,"is_corresponding":false},{"id":1500729,"name":"Winter, Deborah R.","orcid":null,"position":12,"is_corresponding":false},{"id":1500717,"name":"Finer, Gal","orcid":null,"position":0,"is_corresponding":true}],"reference_count":0,"raw_metadata":null,"created_at":"2026-07-19T02:59:28.666390Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}