{"doi":"10.1371/journal.pone.0170051","title":"Housing Systems Influence Gut Microbiota Composition of Sows but Not of Their Piglets","abstract":null,"journal":"PLOS ONE","year":2017,"id":637126,"datarank":0.6435689161722588,"base_score":4.290459441148391,"endowment":4.290459441148391,"self_citation_contribution":0.6435689161722588,"citation_network_contribution":0.0,"self_endowment_contribution":0.6435689161722588,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":72,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":null,"is_data_producer":false,"deposit_databanks":null,"is_oa":false,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":null,"fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1654103,"name":"Lenka Davidova-Gerzova","orcid":null,"position":1,"is_corresponding":false},{"id":1654104,"name":"Elodie Merlot","orcid":null,"position":2,"is_corresponding":false},{"id":1654105,"name":"Matej Medvecky","orcid":null,"position":3,"is_corresponding":false},{"id":1654106,"name":"Ondrej Polansky","orcid":null,"position":4,"is_corresponding":false},{"id":1654107,"name":"Delphine Gardan-Salmon","orcid":null,"position":5,"is_corresponding":false},{"id":1654108,"name":"Helene Quesnel","orcid":null,"position":6,"is_corresponding":false},{"id":1654109,"name":"Ivan Rychlik","orcid":null,"position":7,"is_corresponding":false},{"id":1654102,"name":"Tereza Kubasova","orcid":null,"position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"has_enrichment":true,"resolved":true,"title":"Housing Systems Influence Gut Microbiota Composition of Sows but Not of Their Piglets","abstract":"Different housing systems can be used in pig production and little is known about their effect on gut microbiota composition. In this study we characterized fecal microbiota by sequencing the rRNA genes in sows kept during gestation in conventional pens with a slatted floor and in enriched pens with a floor covered with deep straw. After farrowing, microbiota of 1- and 4-day-old piglets were also monitored. Microbiota of sows from the enriched system contained significantly more Prevotella, Parabacteroides, CF231, Phascolarctobacterium, Fibrobacter, Anaerovibrio and YRC22 and significantly less Lactobacillus, Bulleidia, Lachnospira, Dorea, Ruminococcus and Oscillospira than microbiota of sows from the conventional system. The Firmicutes to Bacteroidetes ratio was 0.96 in the microbiota of sows kept in the enriched pens and this increased to 1.66 in the microbiota of sows kept in the conventional system. The production system therefore influenced microbiota composition, most likely due the ingestion of the straw. The microbiota of 1- and 4-day-old piglets differed from the microbiota of sows and sows therefore did not represent the most important source for their colonization in early days of life.","is_dataset_classified":null,"base_score":4.290459441148391,"endowment":4.290459441148391,"datacite_reuse_total":0,"file_count":0,"downloads":0,"views":0,"has_version_chain":false,"is_dataset":false,"is_oa":false,"pmid":"28085934","pmcid":"PMC5234784","openalex_id":"https://openalex.org/W2573719048","authors":[],"funders":[{"funder_name":"FP7 EU","grant_id":"613574","title":"Sustainable intensive pig and poultry production"},{"funder_name":"Czech Ministry of Agriculture","grant_id":"RO0516","title":null},{"funder_name":"Czech Ministry of Education","grant_id":"CZ.1.05/2.1.00/01.0006–ED0006/01/01","title":null}],"total_grants":3,"fwci":2.9392,"citation_percentile":0.9190484,"influential_citations":0,"citation_trend":[{"year":2017,"count":3},{"year":2018,"count":7},{"year":2019,"count":11},{"year":2020,"count":8},{"year":2021,"count":9},{"year":2022,"count":10},{"year":2023,"count":2},{"year":2024,"count":11},{"year":2025,"count":4},{"year":2026,"count":7}],"oa_status":"gold","license":"cc-by","oa_locations":[{"url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0170051&type=printable","host_type":"journal"},{"url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0170051&type=printable","host_type":"publisher"},{"url":"http://dx.plos.org/10.1371/journal.pone.0170051","host_type":"publisher"},{"url":"https://doi.org/10.1371/journal.pone.0170051","host_type":"journal"},{"url":"https://pubmed.ncbi.nlm.nih.gov/28085934","host_type":"repository"},{"url":"https://hal.science/hal-01594935","host_type":"repository"},{"url":"https://doaj.org/article/befd4fb152ed4d009cc2cf8a102792c1","host_type":"repository"},{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5234784","host_type":"repository"},{"url":"https://europepmc.org/articles/PMC5234784","host_type":"Europe_PMC"},{"url":"https://europepmc.org/articles/PMC5234784?pdf=render","host_type":"Europe_PMC"},{"url":"http://dx.doi.org/10.1371/journal.pone.0170051","host_type":""},{"url":"https://hal.science/hal-01594935v1","host_type":""},{"url":"https://hal.science/hal-01594935v1/document","host_type":""},{"url":"https://dx.doi.org/10.1371/journal.pone.0170051","host_type":""},{"url":"http://prodinra.inra.fr/record/386184","host_type":""},{"url":"https://doi.org/https://doi.org/10.1371/journal.pone.0170051","host_type":""}],"fields_of_study":["Gut microbiota and health","Clostridium difficile and Clostridium perfringens research","Animal Behavior and Welfare Studies","0301 basic medicine","03 medical and health sciences","0303 health sciences","Animal Husbandry","Animals","Animals, Newborn","Behavior, Animal","Feces","Female","Gastrointestinal Microbiome","Housing, Animal","Microbiota","Swine"],"mesh_terms":["Gastrointestinal Microbiome","Animals","Animal Husbandry","Animals, Newborn","Behavior, Animal","Feces","Female","Housing, Animal","Swine","Microbiota"],"keywords":["Ruminococcus","Prevotella","Firmicutes","Biology","Gut flora","Lactobacillus","Bacteroidetes","Feces","Straw","Animal science","Microbiology","Food science","Immunology","Bacteria","16S ribosomal RNA","Fermentation","Genetics","Agronomy","logement animal","Swine","[SDV]Life Sciences [q-bio]","Science","630","microbiote","yelt","Animals","Animal Husbandry","animal health","Behavior, Animal","santé animale","Microbiota","Q","R","sucking pig","truie","Housing, Animal","Gastrointestinal Microbiome","[SDV] Life Sciences [q-bio]","Animals, Newborn","Medicine","Female","porcelet","Research Article"],"sdg_mappings":[{"sdg_number":2,"sdg_label":"2. 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