{"doi":"10.12688/wellcomeopenres.16854.1","title":"The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769","abstract":"<ns3:p> We present a genome assembly from an individual male <ns3:italic>Rattus norvegicus</ns3:italic> (the Norway rat; Chordata; Mammalia; Rodentia; Muridae). The genome sequence is 2.44 gigabases in span. The majority of the assembly is scaffolded into 20 chromosomal pseudomolecules, with both X and Y sex chromosomes assembled. This genome assembly, mRatBN7.2, represents the new reference genome for <ns3:italic>R. norvegicus</ns3:italic> and has been adopted by the Genome Reference Consortium. </ns3:p>","journal":"Wellcome Open Research","year":2021,"id":158356,"datarank":1.3292322104923522,"base_score":3.8501476017100584,"endowment":3.8501476017100584,"self_citation_contribution":0.5775221402565088,"citation_network_contribution":0.7517100702358434,"self_endowment_contribution":0.5775221402565088,"citer_contribution":0.7517100702358434,"corpus_percentile":84.50529898661716,"corpus_rank":2004,"citation_count":46,"citer_count":26,"citers_with_citation_signal":19,"citers_with_endowment":19,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.9544,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":56.25,"fair_percentile":71.90461632528279,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":103854,"name":"Melinda R. 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Williams","orcid":"0000-0001-8924-4447","position":9,"is_corresponding":false},{"id":12579,"name":"Hao Chen","orcid":"0009-0001-6480-7976","position":10,"is_corresponding":false},{"id":103857,"name":"Anne E. Kwitek","orcid":"0000-0003-1024-4116","position":11,"is_corresponding":false},{"id":15623,"name":"Shane A McCarthy","orcid":"0000-0002-2715-4187","position":12,"is_corresponding":false},{"id":550050,"name":"Marcela Uliano‐Silva","orcid":"0000-0001-6723-4715","position":13,"is_corresponding":false},{"id":2108,"name":"William Chow","orcid":"0000-0002-9056-201X","position":14,"is_corresponding":false},{"id":92288,"name":"Alan Tracey","orcid":"0000-0002-4805-9058","position":15,"is_corresponding":false},{"id":2115,"name":"James Torrance","orcid":"0000-0002-6117-8190","position":16,"is_corresponding":false},{"id":65853,"name":"Ying Sims","orcid":"0000-0003-4765-4872","position":17,"is_corresponding":false},{"id":374681,"name":"Richard Challis","orcid":"0000-0001-5902-6641","position":18,"is_corresponding":false},{"id":666945,"name":"Jonathan Threlfall","orcid":"0000-0002-8283-6324","position":19,"is_corresponding":false},{"id":374682,"name":"Mark Blaxter","orcid":"0000-0003-2861-949X","position":20,"is_corresponding":false},{"id":108064,"name":"Kerstin Howe","orcid":"0000-0003-2237-513X","position":0,"is_corresponding":true}],"reference_count":15,"raw_metadata":null,"created_at":"2026-07-18T23:44:26.210708Z","pmid":"34660910","pmcid":"PMC8495504","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":77.7778,"fair_a":75.0,"fair_i":20.0,"fair_r":37.5,"fair_zscore":0.8629,"fair_rationale":{"fair_score":56.25,"has_llm":true,"taxonomy_version":"fair_taxonomy_v5","dimensions":{"F":{"name":"Findable","score":77.78,"criteria":[{"key":"f_dataset_pid","label":"Persistent identifier for the data","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"Accession number PRJNA662962","grounded":true,"rationale":"The paper provides a BioProject accession, which is a persistent identifier scheme. 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Prefer open genomics / sequencing formats such as FASTQ, BAM or VCF.","anchors":["yes","partial","no"],"verdict":"no","current":0.0,"evidence":null,"why":"No file format (e.g., FASTA, FASTQ) is named for the released data.","gain":8.33,"priority":"important","scored":true},{"key":"x_code_availability","dimension":"R","label":"Analysis code available","action":"Publish the analysis code in a public forge, archive a tagged release with a DOI (Zenodo/Software Heritage), and cite that DOI in the paper. NIH DMS Element 2 asks for the tools and code, not only the data — and 'available on request' is not a locator. 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A reader reproducing your work against 'the current release' is reproducing it against a different dataset."],"model":"deepseek/deepseek-v4-flash","agent_version":"fair_agent_v8","fulltext_source":"unpaywall_pdf"},"fair_model":"deepseek/deepseek-v4-flash","fair_agent_version":"fair_agent_v8","fair_fulltext_source":"unpaywall_pdf","fair_has_llm":true,"fair_computed_at":"2026-07-20T11:22:18.262583Z","clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}