{"doi":"10.1186/s13059-020-02122-z","title":"A vast resource of allelic expression data spanning human tissues","abstract":"Allele expression (AE) analysis robustly measures cis-regulatory effects. Here, we present and demonstrate the utility of a vast AE resource generated from the GTEx v8 release, containing 15,253 samples spanning 54 human tissues for a total of 431 million measurements of AE at the SNP level and 153 million measurements at the haplotype level. In addition, we develop an extension of our tool phASER that allows effect sizes of cis-regulatory variants to be estimated using haplotype-level AE data. This AE resource is the largest to date, and we are able to make haplotype-level data publicly available. We anticipate that the availability of this resource will enable future studies of regulatory variation across human tissues.","journal":"Genome Biology","year":2020,"id":11309,"datarank":2.657568667485937,"base_score":4.882801922586371,"endowment":4.882801922586371,"self_citation_contribution":0.7324202883879557,"citation_network_contribution":1.9251483790979815,"self_endowment_contribution":0.7324202883879557,"citer_contribution":1.9251483790979815,"corpus_percentile":66.39544344995932,"corpus_rank":414,"citation_count":141,"citer_count":99,"citers_with_citation_signal":71,"citers_with_endowment":71,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.9129,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-09-11","fair_score":49.7917,"fair_percentile":77.9023746701847,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":7740,"name":"François Aguet","orcid":"0000-0001-9414-300X","position":1,"is_corresponding":false},{"id":29313,"name":"Pejman Mohammadi","orcid":"0000-0003-4457-8552","position":2,"is_corresponding":false},{"id":1761,"name":"Kristin G. Ardlie","orcid":"0000-0003-4272-6283","position":6,"is_corresponding":false},{"id":27305,"name":"Anthony Philippakis","orcid":"0000-0001-6953-3794","position":7,"is_corresponding":false},{"id":24475,"name":"Leanne Haggerty","orcid":"0000-0001-8843-3596","position":8,"is_corresponding":false},{"id":29290,"name":"Kane Hadley","orcid":"0000-0002-2520-155X","position":10,"is_corresponding":false},{"id":16701,"name":"Robert E. Handsaker","orcid":"0000-0002-3128-3547","position":11,"is_corresponding":false},{"id":29310,"name":"Seva Kashin","orcid":"0009-0008-1432-8249","position":13,"is_corresponding":false},{"id":5261,"name":"Sara Mostafavi","orcid":"0000-0003-4698-1177","position":14,"is_corresponding":false},{"id":1085,"name":"Daniel G. MacArthur","orcid":"0000-0002-5771-2290","position":15,"is_corresponding":false},{"id":13802,"name":"Samuel R. Meier","orcid":"0000-0002-7026-2722","position":16,"is_corresponding":false},{"id":29294,"name":"Duyen T. Nguyen","orcid":"0000-0002-6868-4539","position":18,"is_corresponding":false},{"id":14440,"name":"Ayellet V. Segrè","orcid":"0000-0001-6806-5845","position":19,"is_corresponding":false},{"id":29295,"name":"Ellen Todres","orcid":"0000-0001-9289-4432","position":20,"is_corresponding":false},{"id":24101,"name":"Brunilda Balliu","orcid":"0000-0001-8953-804X","position":24,"is_corresponding":false},{"id":29409,"name":"Alvaro N. Barbeira","orcid":"0000-0002-9153-6120","position":25,"is_corresponding":false},{"id":29296,"name":"Rodrigo Bonazzola","orcid":"0000-0001-8811-2581","position":27,"is_corresponding":false},{"id":20874,"name":"Christopher D. Brown","orcid":"0000-0002-3785-5008","position":29,"is_corresponding":false},{"id":18863,"name":"Donald F. Conrad","orcid":"0000-0003-3828-8970","position":31,"is_corresponding":false},{"id":29297,"name":"Daniel J. Cotter","orcid":"0000-0003-3362-6053","position":32,"is_corresponding":false},{"id":52736,"name":"Stuart A. Cook","orcid":"0000-0001-6628-194X","position":33,"is_corresponding":false},{"id":24723,"name":"Sayantan Das","orcid":"0000-0001-6346-1590","position":34,"is_corresponding":false},{"id":29276,"name":"Olivia M. de Goede","orcid":null,"position":35,"is_corresponding":false},{"id":15614,"name":"Emmanouil T. Dermitzakis","orcid":"0000-0002-9302-6490","position":36,"is_corresponding":false},{"id":29299,"name":"Jonah Einson","orcid":"0000-0002-5564-1003","position":37,"is_corresponding":false},{"id":29300,"name":"Barbara E. Engelhardt","orcid":"0000-0002-6139-7334","position":38,"is_corresponding":false},{"id":15613,"name":"Eleazar Eskin","orcid":"0000-0003-1149-4758","position":39,"is_corresponding":false},{"id":29282,"name":"Tiffany Y. Eulalio","orcid":"0000-0002-7084-9646","position":40,"is_corresponding":false},{"id":29278,"name":"Nicole M. Ferraro","orcid":"0000-0003-4291-193X","position":41,"is_corresponding":false},{"id":29301,"name":"Elise D. Flynn","orcid":"0000-0003-0221-8196","position":42,"is_corresponding":false},{"id":29302,"name":"Laure Fresard","orcid":null,"position":43,"is_corresponding":false},{"id":15605,"name":"Eric R. Gamazon","orcid":"0000-0003-4204-8734","position":44,"is_corresponding":false},{"id":29303,"name":"Diego Garrido-Martín","orcid":"0000-0002-4131-4458","position":45,"is_corresponding":false},{"id":29304,"name":"Nicole R. Gay","orcid":"0000-0001-9138-9354","position":46,"is_corresponding":false},{"id":29279,"name":"Michael J. Gloudemans","orcid":"0000-0002-9924-9943","position":48,"is_corresponding":false},{"id":59323,"name":"Simon G. Gregory","orcid":"0000-0002-7805-1743","position":50,"is_corresponding":false},{"id":29306,"name":"Yuan He","orcid":"0000-0002-6461-5341","position":54,"is_corresponding":false},{"id":29307,"name":"Paul J. Hoffman","orcid":null,"position":55,"is_corresponding":false},{"id":15608,"name":"Farhad Hormozdiari","orcid":"0000-0002-5617-6174","position":56,"is_corresponding":false},{"id":7412,"name":"Lei Hou","orcid":"0000-0003-0540-2706","position":57,"is_corresponding":false},{"id":29405,"name":"Hae Kyung Im","orcid":"0000-0003-0333-5685","position":59,"is_corresponding":false},{"id":29308,"name":"Brian Jo","orcid":"0000-0002-9641-7948","position":60,"is_corresponding":false},{"id":29309,"name":"Silva Kasela","orcid":"0000-0003-4362-0034","position":61,"is_corresponding":false},{"id":14693,"name":"Sharon L. R. Kardia","orcid":"0000-0002-9853-3379","position":63,"is_corresponding":false},{"id":28481,"name":"Sarah Kim-Hellmuth","orcid":"0000-0001-8791-5729","position":64,"is_corresponding":false},{"id":29311,"name":"Alan Kwong","orcid":"0000-0002-0779-7126","position":65,"is_corresponding":false},{"id":14836,"name":"Tuuli Lappalainen","orcid":"0000-0002-7746-8109","position":66,"is_corresponding":false},{"id":29305,"name":"Andrew R. Hamel","orcid":"0000-0001-6420-9573","position":69,"is_corresponding":false},{"id":6600,"name":"Serghei Mangul","orcid":"0000-0003-4770-3443","position":71,"is_corresponding":false},{"id":52,"name":"Stephen B. Montgomery","orcid":"0000-0002-5200-3903","position":74,"is_corresponding":false},{"id":29314,"name":"Manuel Muñoz-Aguirre","orcid":"0000-0002-6106-7351","position":75,"is_corresponding":false},{"id":29277,"name":"Daniel C. Nachun","orcid":null,"position":76,"is_corresponding":false},{"id":29315,"name":"Andrew B. Nobel","orcid":"0000-0002-9973-9248","position":79,"is_corresponding":false},{"id":29316,"name":"Meritxell Oliva","orcid":"0000-0002-5068-213X","position":80,"is_corresponding":false},{"id":6274,"name":"Yongjin Park","orcid":"0000-0002-9305-1274","position":82,"is_corresponding":false},{"id":29317,"name":"Princy Parsana","orcid":"0000-0001-5784-9636","position":83,"is_corresponding":false},{"id":29280,"name":"Abhiram S. Rao","orcid":null,"position":84,"is_corresponding":false},{"id":29320,"name":"Chiara Sabatti","orcid":"0000-0001-5829-9058","position":87,"is_corresponding":false},{"id":29321,"name":"Ashis Saha","orcid":"0000-0003-3203-2114","position":88,"is_corresponding":false},{"id":29393,"name":"Andrew D. Skol","orcid":"0009-0005-7530-8127","position":90,"is_corresponding":false},{"id":5157,"name":"Matthew Stephens","orcid":"0000-0001-5397-9257","position":91,"is_corresponding":false},{"id":15894,"name":"Barbara E. Stranger","orcid":"0000-0001-9021-7331","position":92,"is_corresponding":false},{"id":29286,"name":"Benjamin J. Strober","orcid":"0000-0003-2969-2808","position":93,"is_corresponding":false},{"id":29322,"name":"Nicole A. Teran","orcid":"0000-0002-9625-5010","position":94,"is_corresponding":false},{"id":29323,"name":"Ana Viñuela","orcid":"0000-0003-3771-8537","position":96,"is_corresponding":false},{"id":29324,"name":"Gao Wang","orcid":"0000-0001-9336-402X","position":97,"is_corresponding":false},{"id":15607,"name":"Xiaoquan Wen","orcid":"0000-0001-8990-2737","position":98,"is_corresponding":false},{"id":29326,"name":"Valentin Wucher","orcid":"0000-0002-1331-4549","position":100,"is_corresponding":false},{"id":29327,"name":"Yuxin Zou","orcid":"0000-0001-9816-5847","position":101,"is_corresponding":false},{"id":11800,"name":"Pedro G. Ferreira","orcid":"0000-0003-3838-8664","position":102,"is_corresponding":false},{"id":29328,"name":"Gen Li","orcid":"0000-0002-0733-2695","position":103,"is_corresponding":false},{"id":29329,"name":"Marta Melé","orcid":"0000-0001-8874-6453","position":104,"is_corresponding":false},{"id":29366,"name":"Mary E. Barcus","orcid":null,"position":106,"is_corresponding":false},{"id":29332,"name":"Tanya Krubit","orcid":null,"position":108,"is_corresponding":false},{"id":29333,"name":"Jeffrey A. McLean","orcid":null,"position":109,"is_corresponding":false},{"id":29334,"name":"Liqun Qi","orcid":null,"position":110,"is_corresponding":false},{"id":29336,"name":"Nancy V. Roche","orcid":null,"position":112,"is_corresponding":false},{"id":29337,"name":"Anna M. Smith","orcid":null,"position":113,"is_corresponding":false},{"id":43177,"name":"Mingxiang Teng","orcid":"0000-0002-8536-8941","position":114,"is_corresponding":false},{"id":29338,"name":"David E. Tabor","orcid":"0000-0002-8016-9281","position":115,"is_corresponding":false},{"id":29339,"name":"Anita Undale","orcid":null,"position":116,"is_corresponding":false},{"id":29340,"name":"Jason Bridge","orcid":null,"position":117,"is_corresponding":false},{"id":29342,"name":"Barbara A. Foster","orcid":"0000-0003-0459-7011","position":119,"is_corresponding":false},{"id":29343,"name":"Bryan M. Gillard","orcid":"0000-0002-1403-6456","position":120,"is_corresponding":false},{"id":29344,"name":"Richard Hasz","orcid":"0000-0002-8830-162X","position":121,"is_corresponding":false},{"id":29346,"name":"Christopher Johns","orcid":"0000-0003-3724-0430","position":123,"is_corresponding":false},{"id":29347,"name":"Mark Johnson","orcid":"0009-0000-1772-2702","position":124,"is_corresponding":false},{"id":29348,"name":"Ellen Karasik","orcid":null,"position":125,"is_corresponding":false},{"id":32812,"name":"Pushpa Hariharan","orcid":null,"position":126,"is_corresponding":false},{"id":29350,"name":"William F. Leinweber","orcid":null,"position":127,"is_corresponding":false},{"id":29351,"name":"Alisa McDonald","orcid":null,"position":128,"is_corresponding":false},{"id":29352,"name":"Michael T. Moser","orcid":"0000-0001-7587-6486","position":129,"is_corresponding":false},{"id":32798,"name":"Kimberly Ramsey","orcid":null,"position":130,"is_corresponding":false},{"id":29354,"name":"Kimberley D. Ramsey","orcid":null,"position":131,"is_corresponding":false},{"id":43011,"name":"Tatsunori B. Hashimoto","orcid":null,"position":132,"is_corresponding":false},{"id":29356,"name":"Saboor Shad","orcid":null,"position":133,"is_corresponding":false},{"id":29357,"name":"Jeffrey A. Thomas","orcid":null,"position":134,"is_corresponding":false},{"id":29358,"name":"Gary Walters","orcid":null,"position":135,"is_corresponding":false},{"id":29359,"name":"Michael Washington","orcid":"0000-0003-0959-5023","position":136,"is_corresponding":false},{"id":29360,"name":"Joseph Wheeler","orcid":null,"position":137,"is_corresponding":false},{"id":29361,"name":"Scott D. Jewell","orcid":"0000-0001-9469-6261","position":138,"is_corresponding":false},{"id":29362,"name":"Daniel C. Rohrer","orcid":"0000-0002-1784-9196","position":139,"is_corresponding":false},{"id":29363,"name":"Dana R. Valley","orcid":null,"position":140,"is_corresponding":false},{"id":29364,"name":"David A. Davis","orcid":"0000-0002-9323-6180","position":141,"is_corresponding":false},{"id":29365,"name":"Deborah C. Mash","orcid":"0000-0002-1352-7851","position":142,"is_corresponding":false},{"id":29367,"name":"Philip A. Branton","orcid":"0000-0002-0898-9605","position":144,"is_corresponding":false},{"id":29369,"name":"Laura K. Barker","orcid":null,"position":146,"is_corresponding":false},{"id":29370,"name":"Heather M. Gardiner","orcid":"0000-0003-2017-991X","position":147,"is_corresponding":false},{"id":29371,"name":"Maghboeba Mosavel","orcid":"0000-0003-3501-2792","position":148,"is_corresponding":false},{"id":29372,"name":"Laura A. Siminoff","orcid":"0000-0002-6775-665X","position":149,"is_corresponding":false},{"id":20075,"name":"David B. Jaffe","orcid":"0000-0001-8739-568X","position":150,"is_corresponding":false},{"id":24474,"name":"Maximilian Haeussler","orcid":"0000-0001-8721-8253","position":151,"is_corresponding":false},{"id":29373,"name":"Thomas Juettemann","orcid":"0000-0002-9035-5301","position":152,"is_corresponding":false},{"id":41926,"name":"Melissa J. Hubisz","orcid":"0000-0002-9561-6830","position":153,"is_corresponding":false},{"id":29374,"name":"Christopher M. Lee","orcid":"0000-0001-6574-3567","position":154,"is_corresponding":false},{"id":29375,"name":"Conner C. Powell","orcid":null,"position":155,"is_corresponding":false},{"id":19975,"name":"Kate R. Rosenbloom","orcid":"0000-0001-8799-4826","position":156,"is_corresponding":false},{"id":29376,"name":"Magali Ruffier","orcid":"0000-0002-8386-1580","position":157,"is_corresponding":false},{"id":29377,"name":"Dan Sheppard","orcid":"0000-0001-8683-7298","position":158,"is_corresponding":false},{"id":29378,"name":"Kieron Taylor","orcid":"0000-0002-6575-5223","position":159,"is_corresponding":false},{"id":29379,"name":"Stephen J. Trevanion","orcid":"0000-0002-4862-3333","position":160,"is_corresponding":false},{"id":32862,"name":"Vyacheslav Amstislavskiy","orcid":"0000-0002-1384-7599","position":161,"is_corresponding":false},{"id":29381,"name":"Nathan S. Abell","orcid":"0000-0003-1098-5395","position":162,"is_corresponding":false},{"id":29382,"name":"Joshua Akey","orcid":null,"position":163,"is_corresponding":false},{"id":4064,"name":"Lin Chen","orcid":"0000-0001-6864-023X","position":164,"is_corresponding":false},{"id":29383,"name":"Kathryn Demanelis","orcid":"0000-0002-1477-562X","position":165,"is_corresponding":false},{"id":309,"name":"Jennifer Anne Doherty","orcid":"0000-0002-1454-8187","position":166,"is_corresponding":false},{"id":29384,"name":"Andrew P. Feinberg","orcid":"0000-0002-8364-1991","position":167,"is_corresponding":false},{"id":29385,"name":"Kasper D. Hansen","orcid":"0000-0003-0086-0687","position":168,"is_corresponding":false},{"id":23863,"name":"Peter F. Hickey","orcid":"0000-0002-8153-6258","position":169,"is_corresponding":false},{"id":29386,"name":"Farzana Jasmine","orcid":"0000-0002-5980-1174","position":171,"is_corresponding":false},{"id":21416,"name":"Lihua Jiang","orcid":"0000-0002-2895-2762","position":172,"is_corresponding":false},{"id":19898,"name":"Stephen C.J. Parker","orcid":"0000-0001-8122-0117","position":173,"is_corresponding":false},{"id":29387,"name":"Muhammad G. Kibriya","orcid":"0000-0001-9784-6958","position":175,"is_corresponding":false},{"id":29388,"name":"Qin Li","orcid":"0000-0002-0146-8858","position":177,"is_corresponding":false},{"id":29389,"name":"Shin Lin","orcid":"0000-0003-0118-0413","position":178,"is_corresponding":false},{"id":29392,"name":"Lindsay F. Rizzardi","orcid":"0000-0002-2866-9625","position":184,"is_corresponding":false},{"id":29394,"name":"Kevin S. Smith","orcid":"0000-0003-2432-1928","position":186,"is_corresponding":false},{"id":43040,"name":"Momoe Kato","orcid":"0000-0002-1161-5233","position":188,"is_corresponding":false},{"id":29396,"name":"Meng Wang","orcid":"0000-0002-2469-3222","position":191,"is_corresponding":false},{"id":29397,"name":"Latarsha J. Carithers","orcid":null,"position":193,"is_corresponding":false},{"id":4111,"name":"Ping Guan","orcid":"0000-0001-6672-4405","position":194,"is_corresponding":false},{"id":29398,"name":"Susan E. Koester","orcid":null,"position":195,"is_corresponding":false},{"id":29399,"name":"A. Roger Little","orcid":"0000-0001-6831-0177","position":196,"is_corresponding":false},{"id":4126,"name":"Helen M. Moore","orcid":"0000-0003-4585-1581","position":197,"is_corresponding":false},{"id":29400,"name":"Concepcion R. Nierras","orcid":null,"position":198,"is_corresponding":false},{"id":29401,"name":"Abhi K. Rao","orcid":null,"position":199,"is_corresponding":false},{"id":29403,"name":"Simona Volpi","orcid":"0000-0002-0353-2235","position":201,"is_corresponding":false},{"id":1058,"name":"Gad Getz","orcid":"0000-0002-0936-0753","position":205,"is_corresponding":false},{"id":29104,"name":"Katherine Huang","orcid":"0000-0002-5013-4790","position":206,"is_corresponding":false},{"id":35459,"name":"Chia‐Yen Chen","orcid":"0000-0001-9548-5597","position":208,"is_corresponding":false},{"id":29410,"name":"Laure Frésard","orcid":"0000-0001-8154-6328","position":210,"is_corresponding":false},{"id":29407,"name":"Daniel Nachun","orcid":"0000-0002-0271-1135","position":212,"is_corresponding":false},{"id":20781,"name":"Yong‐Jin Park","orcid":"0000-0001-9843-850X","position":213,"is_corresponding":false},{"id":29408,"name":"Abhiram Rao","orcid":null,"position":214,"is_corresponding":false},{"id":29411,"name":"Ferrán Reverter","orcid":"0000-0002-9489-3350","position":215,"is_corresponding":false},{"id":29413,"name":"Esti Yeger‐Lotem","orcid":"0000-0002-8279-7898","position":217,"is_corresponding":false},{"id":29414,"name":"Nancy Roche","orcid":null,"position":218,"is_corresponding":false},{"id":29418,"name":"Leslie H. Sobin","orcid":null,"position":219,"is_corresponding":false},{"id":29417,"name":"J. Gary Wheeler","orcid":null,"position":221,"is_corresponding":false},{"id":11675,"name":"Joshua M. Akey","orcid":"0000-0002-4411-1330","position":222,"is_corresponding":false},{"id":43166,"name":"Valentina Snetkova","orcid":"0000-0003-3575-3240","position":223,"is_corresponding":false},{"id":18775,"name":"J Stamatoyannopoulos","orcid":"0000-0002-2664-5769","position":224,"is_corresponding":false},{"id":14833,"name":"Stephane E. Castel","orcid":"0000-0002-0707-2133","position":0,"is_corresponding":true}],"reference_count":21,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":"32912332","pmcid":"PMC7488534","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":"gold","license":"cc-by","views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":65.0,"fair_a":67.5,"fair_i":25.0,"fair_r":41.6667,"fair_zscore":0.4143,"fair_rationale":{"fair_score":49.79,"has_llm":true,"dimensions":{"F":{"name":"Findable","score":65.0,"criteria":[{"key":"f_has_doi","label":"Has a persistent DOI","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"DOI present","rationale":null},{"key":"f_repository_presence","label":"Indexed in repositories / literature DBs","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"datacite=0, pmcid=True, pmid=True","rationale":null},{"key":"f_persistent_ids","label":"Resolvable scholarly identifiers (OpenAlex)","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no OpenAlex id","rationale":null},{"key":"f_metadata_richness","label":"Rich, machine-readable metadata","kind":"llm","weight":1.0,"fraction":0.5,"signal":null,"rationale":"The text mentions raw data formats and file names but does not describe structured, machine-readable metadata (e.g., schema.org or DCAT) accompanying the dataset."}]},"A":{"name":"Accessible","score":67.5,"criteria":[{"key":"a_open_access","label":"Open Access / files deposited","kind":"deterministic","weight":1.5,"fraction":1.0,"signal":"Open Access","rationale":null},{"key":"a_retrievable","label":"Free full text retrievable","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"0 OA location(s)","rationale":null},{"key":"a_access_protocol","label":"Clear data/code access protocol","kind":"llm","weight":1.0,"fraction":0.75,"signal":null,"rationale":"The text specifies two access routes: SNP-level data requires authorization via dbGaP, while haplotype-level data is publicly accessible via the GTEx Portal, giving a clear but partially restricted protocol."}]},"I":{"name":"Interoperable","score":25.0,"criteria":[{"key":"i_linked_data","label":"Linked datasets / DataCite relations","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"linked_datasets=0, datacite=0","rationale":null},{"key":"i_standard_ids","label":"References data via standard accessions","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"accessions=0, trials=0","rationale":null},{"key":"i_standards","label":"Standard formats, vocabularies & identifiers","kind":"llm","weight":1.0,"fraction":0.5,"signal":null,"rationale":"The paper uses standard file formats (VCF, GATK output) and references common ontologies (GENCODE), but lacks explicit use of controlled vocabularies or global identifiers for the dataset itself."}]},"R":{"name":"Reusable","score":41.67,"criteria":[{"key":"r_license","label":"Clear, open reuse license","kind":"deterministic","weight":1.5,"fraction":0.0,"signal":"no license","rationale":null},{"key":"r_downloads","label":"Demonstrated reuse (downloads)","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"downloads=0","rationale":null},{"key":"r_version","label":"Versioned / maintained","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no version chain","rationale":null},{"key":"r_dataset","label":"Classified as a data resource","kind":"deterministic","weight":0.5,"fraction":1.0,"signal":"is_dataset","rationale":null},{"key":"r_reusability","label":"Data-availability statement, license & reproducibility","kind":"llm","weight":2.0,"fraction":0.667,"signal":null,"rationale":"The data and software are under open licenses (CC BY 4.0 for paper, GPL v3 for code) with a data-availability statement, yet reproducibility is partially limited by controlled-access data (SNP-level) and insufficient detail on all analysis parameters."}]}},"suggestions":["Publish a formal metadata record (e.g., using DataCite schema) describing the dataset's structure, variables, and provenance.","Provide a DOI or persistent identifier for the entire dataset, not just the paper.","Describe the schema.org markup or machine-readable metadata embedded in the dataset pages.","Specify controlled vocabularies (e.g., from OBO foundry) used for tissue types, gene IDs, and sample attributes.","Include a complete computational workflow (e.g., as a container or workflow language file) to reproduce all analyses from raw data to figures."],"model":"deepseek/deepseek-v4-flash","agent_version":"fair_agent_v2","fulltext_source":"epmc_xml"},"fair_model":"deepseek/deepseek-v4-flash","fair_agent_version":"fair_agent_v2","fair_fulltext_source":"epmc_xml","fair_has_llm":true,"fair_computed_at":"2026-06-18T00:38:19.347023Z","clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}