{"doi":"10.1128/mra.01404-20","title":"Complete Genome Sequence of Klebsiella pneumoniae Jumbo Phage Miami","abstract":"Bacteriophage Miami infects Klebsiella pneumoniae , a Gram-negative pathogen that is becoming an increasing threat to public health due to its multidrug resistance. Here, we describe the annotation of the 253,383-bp jumbo phage Miami genome sequence and its similarity to other myophages.","journal":"Microbiology Resource Announcements","year":2021,"id":195331,"datarank":0.4978839285359269,"base_score":2.1972245773362196,"endowment":2.1972245773362196,"self_citation_contribution":0.32958368660043297,"citation_network_contribution":0.1683002419354939,"self_endowment_contribution":0.32958368660043297,"citer_contribution":0.1683002419354939,"corpus_percentile":61.5456022278951,"corpus_rank":4972,"citation_count":8,"citer_count":8,"citers_with_citation_signal":5,"citers_with_endowment":5,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.916,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":58.3333,"fair_percentile":72.8829104249465,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":767331,"name":"Lauren Lessor","orcid":null,"position":1,"is_corresponding":false},{"id":766571,"name":"Tram Le","orcid":"0000-0002-1305-2462","position":2,"is_corresponding":false},{"id":766572,"name":"James Clark","orcid":"0000-0003-4673-6112","position":3,"is_corresponding":false},{"id":754504,"name":"Jason J. Gill","orcid":"0000-0002-9494-6053","position":4,"is_corresponding":false},{"id":554098,"name":"Mei Liu","orcid":"0000-0003-1156-2722","position":5,"is_corresponding":false},{"id":767330,"name":"Daniel Mora","orcid":null,"position":0,"is_corresponding":true}],"reference_count":21,"raw_metadata":null,"created_at":"2026-07-18T23:50:07.691929Z","pmid":"33509994","pmcid":"PMC7844079","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":83.3333,"fair_a":62.5,"fair_i":20.0,"fair_r":25.0,"fair_zscore":0.9454,"fair_rationale":{"fair_score":58.33,"has_llm":true,"taxonomy_version":"fair_taxonomy_v5","dimensions":{"F":{"name":"Findable","score":83.33,"criteria":[{"key":"f_dataset_pid","label":"Persistent identifier for the data","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .","grounded":true,"rationale":"The paper provides multiple persistent identifiers (GenBank, BioSample, BioProject, SRA) for the dataset.","anchors":["RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit","RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier'","FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'"],"scored":true,"signal":null},{"key":"f_repository_named","label":"Named repository","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . 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'Free to use' is not a licence: it grants nothing a reuser's institution can rely on.","anchors":["yes","partial","no"],"verdict":"no","current":0.0,"evidence":null,"why":"The paper does not name a license for the data; the CC BY license applies to the article, not the data.","gain":16.67,"priority":"essential","scored":true},{"key":"i_open_nonproprietary_format","dimension":"I","label":"Open file format","action":"Release the data in an open, community-standard format (CSV/TSV, JSON, HDF5, NetCDF, FASTQ, VCF, NIfTI…) instead of — or alongside — any proprietary or instrument-native format, and name the format in the paper. A dataset that needs a €2,000 licence to open is not reusable. 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Archive the analysis code in a versioned repository (GitHub + a Zenodo release DOI).","anchors":["yes","partial","no"],"verdict":"no","current":0.0,"evidence":null,"why":"No code availability statement or locator is provided for custom code (if any).","gain":8.33,"priority":"important","scored":true},{"key":"f_dataset_cited","dimension":"F","label":"Dataset formally cited","action":"Cite the dataset in the reference list like a publication — creator, year, title, repository, DOI/accession — and cite it in-text where it is used. Only a reference- list entry is machine-readable to Crossref/DataCite, and only a citation lets the data earn credit. Cite the neuroimaging repository accession (e.g. from OpenNeuro or NeuroVault) in the reference list.","anchors":["yes","partial","no"],"verdict":"partial","current":0.5,"evidence":"The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . 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In neuroimaging, describe the data with BIDS, NIfTI or DICOM.","anchors":["yes","partial","no"],"verdict":"no","current":0.0,"evidence":null,"why":"No data/metadata community standard (e.g., MIAME, ontology) or manuscript reporting guideline is named in the paper.","gain":0.0,"priority":"important","scored":false},{"key":"r_documentation_codebook","dimension":"R","label":"Documentation / codebook","action":"Ship a README and a data dictionary IN the deposit — every file, every variable, its units, its allowed values, its missing-value codes. It is the cheapest single thing that makes a dataset usable by someone who was not in the lab, and a table buried in the article does not travel with the data.","anchors":["yes","partial","no"],"verdict":"no","current":0.0,"evidence":null,"why":"No documentation object (README, data dictionary, codebook) is named as travelling with the data, and no variable-definition table exists inside the article. 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