{"doi":"10.1128/mra.00742-21","title":"Draft Genome Sequences of Three <i>Shewanella</i> sp. Strains Isolated from Urban Freshwaters in the Ohio River Valley, USA","abstract":"Draft genome sequences of three Shewanella sp. strains are reported. The strains NKUCC01_JLK, NKUCC05_KAH, and NKUCC06_TVS were isolated from freshwater sources in the Ohio River Valley, USA. These genome sequences provide insights into Shewanella adaptation to urban freshwaters and may help to elucidate their roles in biogeochemical cycling.","journal":"Microbiology Resource Announcements","year":2021,"id":226681,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":0.0,"corpus_rank":10062,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.9026,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":70.8333,"fair_percentile":91.99021705900336,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":830027,"name":"J. Cooper","orcid":"0000-0001-6355-4420","position":1,"is_corresponding":false},{"id":534142,"name":"Joy L. Kappesser","orcid":null,"position":0,"is_corresponding":true}],"reference_count":10,"raw_metadata":null,"created_at":"2026-07-18T23:54:38.004707Z","pmid":"34528821","pmcid":"PMC8444977","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":94.4444,"fair_a":62.5,"fair_i":40.0,"fair_r":41.6667,"fair_zscore":1.4401,"fair_rationale":{"fair_score":70.83,"has_llm":true,"taxonomy_version":"fair_taxonomy_v5","dimensions":{"F":{"name":"Findable","score":94.44,"criteria":[{"key":"f_dataset_pid","label":"Persistent identifier for the data","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"PRJNA734631","grounded":true,"rationale":"The paper provides a BioProject accession (PRJNA734631) which is a persistent identifier scheme for the dataset.","anchors":["RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit","RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier'","FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'"],"scored":true,"signal":null},{"key":"f_repository_named","label":"Named repository","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"DDBJ/ENA/GenBank","grounded":true,"rationale":"The paper names GenBank (part of DDBJ/ENA/GenBank) as the repository where the genome sequences are deposited, which is a recognised data repository.","anchors":["RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed (","NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived","NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten"],"scored":true,"signal":null},{"key":"f_data_availability_statement","label":"Data-availability statement","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"The whole-genome shotgun projects for Shewanella sp. strain NKUCC01_JLK, strain NKUCC05_KAH, and strain NKUCC06_TVS have been deposited in DDBJ/ENA/GenBank under the BioProject accession number PRJNA734631 ; the versions described in this paper are versions JAHKRD000000000.1 , JAHKQZ000000000.1 , and JAHKQX000000000.1 , respectively. Detailed information can be found in Table 1 regarding BioSample and Sequence Read Archive (SRA) accession numbers. Log files corresponding to the output of the genome assembly by Shovill v1.1.0 and the subsequent graph assembly files for each strain (.gfa) are located at FigShare ( https://doi.org/10.6084/m9.figshare.14999802 ).","grounded":true,"rationale":"The data-availability statement points to repositories (GenBank, FigShare) with accessions and a DOI, which is a repository record (Colavizza category 3).","anchors":["Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li","Springer Nature research data policy — Data Availability Statements: standard statement templat","RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes"],"scored":false,"signal":null},{"key":"f_discovery_metadata","label":"Description of the dataset as an object","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"TABLE 1 Summary of genome data for the three Shewanella sp. strains described in this study","grounded":true,"rationale":"The paper contains a table (Table 1) that itemises the genome data (assembly size, G+C content, etc.) for each strain, providing an itemised inventory of the dataset.","anchors":["RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential)","FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability'","FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'"],"scored":false,"signal":null},{"key":"f_dataset_cited","label":"Dataset formally cited","kind":"llm","weight":1.0,"fraction":0.5,"verdict":"partial","evidence":"The whole-genome shotgun projects for Shewanella sp. strain NKUCC01_JLK, strain NKUCC05_KAH, and strain NKUCC06_TVS have been deposited in DDBJ/ENA/GenBank under the BioProject accession number PRJNA734631","grounded":true,"rationale":"The dataset identifiers (BioProject, SRA, GenBank) appear in the body text and Table 1, but not as a separate reference-list entry.","anchors":["FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first-","RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes","FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'"],"scored":true,"signal":null}]},"A":{"name":"Accessible","score":62.5,"criteria":[{"key":"a_data_openly_accessible","label":"Access route free of preconditions","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"The whole-genome shotgun projects for Shewanella sp. strain NKUCC01_JLK, strain NKUCC05_KAH, and strain NKUCC06_TVS have been deposited in DDBJ/ENA/GenBank under the BioProject accession number PRJNA734631","grounded":true,"rationale":"The data are deposited in public repositories (GenBank, FigShare) with no stated precondition, so the access route is unconditional.","anchors":["RDA-A1.1-01D — 'Data is accessible through a free access protocol'","FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data'","NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'"],"scored":true,"signal":null},{"key":"a_access_conditions_stated","label":"Access level labelled","kind":"llm","weight":1.0,"fraction":0.5,"verdict":"partial","evidence":"The whole-genome shotgun projects for Shewanella sp. strain NKUCC01_JLK, strain NKUCC05_KAH, and strain NKUCC06_TVS have been deposited in DDBJ/ENA/GenBank under the BioProject accession number PRJNA734631 ; the versions described in this paper are versions JAHKRD000000000.1 , JAHKQZ000000000.1 , and JAHKQX000000000.1 , respectively. 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