{"doi":"10.1109/escience.2018.00024","title":"Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data","abstract":"Nanopublications are a Linked Data format for scholarly data publishing that has received considerable uptake in the last few years. In contrast to the common Linked Data publishing practice, nanopublications work at the granular level of atomic information snippets and provide a consistent container format to attach provenance and metadata at this atomic level. While the nanopublications format is domain-independent, the datasets that have become available in this format are mostly from Life Science domains, including data about diseases, genes, proteins, drugs, biological pathways, and biotic interactions. More than 10 million such nanopublications have been published, which now form a valuable resource for studies on the domain level of the given Life Science domains as well as on the more technical levels of provenance modeling and heterogeneous Linked Data. We provide here an overview of this combined nanopublication dataset, show the results of some overarching analyses, and describe how it can be accessed and queried.","journal":"2018 IEEE 14th International Conference on e-Science (e-Science)","year":2018,"id":10779,"datarank":0.5709993734655481,"base_score":3.8066624897703196,"endowment":3.8066624897703196,"self_citation_contribution":0.5709993734655481,"citation_network_contribution":0.0,"self_endowment_contribution":0.5709993734655481,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":44,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.1669,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2018-10-01","fair_score":61.25,"fair_percentile":90.8,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":4963,"name":"Juan M. Banda","orcid":"0000-0001-8499-824X","position":1,"is_corresponding":false},{"id":2493,"name":"Egon L. Willighagen","orcid":"0000-0001-7542-0286","position":2,"is_corresponding":false},{"id":2831,"name":"Friederike Ehrhart","orcid":"0000-0002-7770-620X","position":3,"is_corresponding":false},{"id":12314,"name":"Chris Evelo","orcid":null,"position":4,"is_corresponding":false},{"id":88383,"name":"Tareq B. Malas","orcid":null,"position":5,"is_corresponding":false},{"id":74,"name":"Michel J. Dumontier","orcid":"0000-0003-4727-9435","position":6,"is_corresponding":false},{"id":88384,"name":"Albert Merono-Penuela","orcid":null,"position":7,"is_corresponding":false},{"id":6530,"name":"Alexander Malic","orcid":"0000-0002-8394-3439","position":8,"is_corresponding":false},{"id":88385,"name":"Jorrit H. Poelen","orcid":"0000-0003-3138-4118","position":9,"is_corresponding":false},{"id":88386,"name":"Allen H. Hurlbert","orcid":"0000-0002-5678-9907","position":10,"is_corresponding":false},{"id":88387,"name":"Emilio Centeno Ortiz","orcid":null,"position":11,"is_corresponding":false},{"id":7717,"name":"Laura I. Furlong","orcid":"0000-0002-9383-528X","position":12,"is_corresponding":false},{"id":29432,"name":"Christine Chichester","orcid":"0000-0001-6818-334X","position":14,"is_corresponding":false},{"id":2494,"name":"Chris T. Evelo","orcid":"0000-0002-5301-3142","position":15,"is_corresponding":false},{"id":88389,"name":"Albert Meroño-Peñuela","orcid":"0000-0003-4646-5842","position":16,"is_corresponding":false},{"id":7102,"name":"Núria Queralt-Rosiñach","orcid":"0000-0003-0169-8159","position":17,"is_corresponding":false},{"id":4964,"name":"Tobias Kuhn","orcid":"0000-0002-1267-0234","position":0,"is_corresponding":true}],"reference_count":35,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":100.0,"fair_a":70.0,"fair_i":50.0,"fair_r":25.0,"fair_zscore":null,"fair_rationale":{"fair_score":61.25,"has_llm":false,"dimensions":{"F":{"name":"Findable","score":100.0,"criteria":[{"key":"f_has_doi","label":"Has a persistent DOI","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"DOI present","rationale":null},{"key":"f_repository_presence","label":"Indexed in repositories / literature DBs","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"datacite=6, pmcid=False, pmid=True","rationale":null},{"key":"f_persistent_ids","label":"Resolvable scholarly identifiers (OpenAlex)","kind":"deterministic","weight":0.5,"fraction":1.0,"signal":"OpenAlex id present","rationale":null}]},"A":{"name":"Accessible","score":70.0,"criteria":[{"key":"a_open_access","label":"Open Access / files deposited","kind":"deterministic","weight":1.5,"fraction":0.5,"signal":"files/OA location present but not flagged OA","rationale":null},{"key":"a_retrievable","label":"Free full text retrievable","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"8 OA location(s)","rationale":null}]},"I":{"name":"Interoperable","score":50.0,"criteria":[{"key":"i_linked_data","label":"Linked datasets / DataCite relations","kind":"deterministic","weight":1.0,"fraction":1.0,"signal":"linked_datasets=6, datacite=6","rationale":null},{"key":"i_standard_ids","label":"References data via standard accessions","kind":"deterministic","weight":1.0,"fraction":0.0,"signal":"accessions=0, trials=0","rationale":null}]},"R":{"name":"Reusable","score":25.0,"criteria":[{"key":"r_license","label":"Clear, open reuse license","kind":"deterministic","weight":1.5,"fraction":0.5,"signal":"license present (other-oa)","rationale":null},{"key":"r_downloads","label":"Demonstrated reuse (downloads)","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"downloads=0","rationale":null},{"key":"r_version","label":"Versioned / maintained","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"no version chain","rationale":null},{"key":"r_dataset","label":"Classified as a data resource","kind":"deterministic","weight":0.5,"fraction":0.0,"signal":"not a dataset","rationale":null}]}},"suggestions":["Reference data using standard accessions (e.g. GEO, PDB, ClinicalTrials.gov).","Maintain explicit versioning for the dataset.","Make the paper/data Open Access or deposit the files in an open repository.","Attach a clear, open reuse license (e.g. CC-BY or CC0)."],"model":null,"agent_version":"fair_agent_v3","fulltext_source":"oa_pdf"},"fair_model":null,"fair_agent_version":"fair_agent_v3","fair_fulltext_source":"oa_pdf","fair_has_llm":false,"fair_computed_at":"2026-06-27T18:25:58.766408Z","clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}