{"doi":"10.1101/2025.10.29.685411","title":"VRC01 Selects Rare HIV Escape Mutations After Acquisition in Antibody-Mediated Prevention Trials","abstract":"Abstract Broadly neutralizing antibodies (bnAbs) show promise in HIV prevention, yet viral escape remains a challenge. In the Antibody Mediated Prevention (AMP) trials, the CD4 binding site (CD4bs) bNAb VRC01 blocked acquisition by VRC01-sensitive strains. However, its influence on viral evolution post-acquisition is not fully understood. Here we analyzed &gt;12,000 HIV env sequences from 47 participants from the AMP trials, identifying VRC01-mediated de novo escape mutations in 8 of 26 VRC01-treated participants but none in 21 placebo participants. These mutations were found at very low frequency (&lt;1%) in global viruses. Escape mutations, primarily located in the Loop-D and β23/V5 regions of Env, conferred cross-resistance to several CD4bs bnAbs, while more potent CD4bs bnAbs like N6 and 1-18 largely retained their activity. Our findings demonstrate that prophylactic VRC01 can select for viral escape after infection, underscoring the need for next-generation bnAbs with improved breadth and potency to enhance durability and efficacy of antibody-based HIV prevention.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2025,"id":559395,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":1,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9565,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1461215,"name":"Lyle Curry","orcid":null,"position":1,"is_corresponding":false},{"id":355225,"name":"Nonhlanhla N. Mkhize","orcid":"0000-0003-3037-1243","position":2,"is_corresponding":false},{"id":103727,"name":"Elena Giorgi","orcid":"0000-0003-2968-1033","position":3,"is_corresponding":false},{"id":708779,"name":"Craig A. Magaret","orcid":"0000-0002-5056-2664","position":4,"is_corresponding":false},{"id":501396,"name":"Bronwen E. Lambson","orcid":"0000-0003-4546-2463","position":5,"is_corresponding":false},{"id":1452434,"name":"Sinethemba Bhebhe","orcid":null,"position":6,"is_corresponding":false},{"id":798189,"name":"Haajira Kaldine","orcid":"0000-0002-7946-5606","position":7,"is_corresponding":false},{"id":501393,"name":"Thandeka Moyo-Gwete","orcid":"0000-0002-4269-9281","position":8,"is_corresponding":false},{"id":36876,"name":"Morgane Rolland","orcid":"0000-0003-3650-8490","position":9,"is_corresponding":false},{"id":583047,"name":"Raabya Rossenkhan","orcid":null,"position":10,"is_corresponding":false},{"id":243166,"name":"Nina Marie G. Garcia","orcid":"0000-0003-0039-4073","position":11,"is_corresponding":false},{"id":248553,"name":"Chivonne Moodley","orcid":null,"position":12,"is_corresponding":false},{"id":1028157,"name":"Anna Yssel","orcid":"0000-0003-1165-3237","position":13,"is_corresponding":false},{"id":331739,"name":"Yunda Huang","orcid":"0000-0003-1546-6172","position":14,"is_corresponding":false},{"id":1461216,"name":"Alaine A. Marsden","orcid":null,"position":15,"is_corresponding":false},{"id":286355,"name":"Daniel B. Reeves","orcid":"0000-0001-5684-9538","position":16,"is_corresponding":false},{"id":254835,"name":"Bryan T. Mayer","orcid":"0000-0003-2258-5276","position":17,"is_corresponding":false},{"id":91902,"name":"Roger E. Bumgarner","orcid":"0000-0002-8168-6985","position":18,"is_corresponding":false},{"id":1028158,"name":"Nicolas Beaume","orcid":"0000-0001-7518-7277","position":19,"is_corresponding":false},{"id":1028160,"name":"Dylan H. Westfall","orcid":"0000-0002-2434-8525","position":20,"is_corresponding":false},{"id":539331,"name":"Michal Juraska","orcid":"0000-0002-0920-2915","position":21,"is_corresponding":false},{"id":420012,"name":"Allan C. deCamp","orcid":"0000-0003-1404-4322","position":22,"is_corresponding":false},{"id":1413169,"name":"Hugh Murrell","orcid":null,"position":23,"is_corresponding":false},{"id":290882,"name":"Hongjun Bai","orcid":"0000-0002-3501-3974","position":24,"is_corresponding":false},{"id":1460612,"name":"Wenjie Deng","orcid":"0000-0002-5615-0353","position":25,"is_corresponding":false},{"id":585906,"name":"Alec Pankow","orcid":"0000-0001-9108-1683","position":26,"is_corresponding":false},{"id":103728,"name":"Tanmoy Bhattacharya","orcid":"0000-0002-1060-652X","position":27,"is_corresponding":false},{"id":501395,"name":"Talita York","orcid":"0000-0003-2884-3010","position":28,"is_corresponding":false},{"id":1028899,"name":"Nonkululeko Ndabambi","orcid":null,"position":29,"is_corresponding":false},{"id":645178,"name":"Lennie Chen","orcid":null,"position":30,"is_corresponding":false},{"id":281571,"name":"Hong Zhao","orcid":"0000-0003-4616-3123","position":31,"is_corresponding":false},{"id":1461217,"name":"Asanda Gwashu-Nyangiri","orcid":null,"position":32,"is_corresponding":false},{"id":607447,"name":"Ruwayhida Thebus","orcid":null,"position":33,"is_corresponding":false},{"id":1385189,"name":"Paula Marantz Cohen","orcid":null,"position":34,"is_corresponding":false},{"id":296043,"name":"Ben Murrell","orcid":"0000-0002-0393-4445","position":35,"is_corresponding":false},{"id":522324,"name":"Shelly Karuna","orcid":"0000-0001-5946-9733","position":36,"is_corresponding":false},{"id":433168,"name":"John Hural","orcid":null,"position":37,"is_corresponding":false},{"id":385787,"name":"Nyaradzo Mgodi","orcid":"0000-0002-3085-5259","position":38,"is_corresponding":false},{"id":106174,"name":"Srilatha Edupuganti","orcid":"0000-0001-6566-9969","position":39,"is_corresponding":false},{"id":36867,"name":"Lynn Morris","orcid":"0000-0003-3961-7828","position":40,"is_corresponding":false},{"id":103755,"name":"David C. Montefiori","orcid":"0000-0003-0856-6319","position":41,"is_corresponding":false},{"id":52019,"name":"M. Juliana McElrath","orcid":"0000-0003-2276-7117","position":42,"is_corresponding":false},{"id":249712,"name":"Myron S. Cohen","orcid":"0000-0001-5917-9664","position":43,"is_corresponding":false},{"id":96348,"name":"Lawrence Corey","orcid":"0000-0002-2179-2436","position":44,"is_corresponding":false},{"id":472908,"name":"Paul T. Edlefsen","orcid":"0000-0002-8393-8103","position":45,"is_corresponding":false},{"id":96350,"name":"Peter B. Gilbert","orcid":"0000-0002-2662-9427","position":46,"is_corresponding":false},{"id":138629,"name":"Penny L. Moore","orcid":"0000-0001-8719-4028","position":47,"is_corresponding":false},{"id":415818,"name":"James I. Mullins","orcid":"0000-0002-4461-8158","position":48,"is_corresponding":false},{"id":502204,"name":"Carolyn Williamson","orcid":null,"position":0,"is_corresponding":true}],"reference_count":55,"raw_metadata":null,"created_at":"2026-07-19T02:55:34.849815Z","pmid":"41279072","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}