{"doi":"10.1101/2025.07.28.666606","title":"An Allosteric Model for Electromechanical Coupling in Cardiac CNBD Channels","abstract":"Abstract Ion channels in the cyclic nucleotide-binding domain (CNBD) family, including hyperpolarization-activated cyclic nucleotide-gated (HCN) channels and human ether-à-go-go-related gene (hERG) channels, play pivotal roles in regulating cardiac action potentials. HCN channels are uniquely activated by hyperpolarization, rather than depolarization, a critical mechanism for controlling the involuntary pacemaker activity of the heart. In contrast, hERG channels are depolarization-activated and mediate K + currents essential for action potential repolarization. Notably, certain hERG mutations, including those associated with long-QT syndrome, can induce biphasic activation by both hyperpolarization and depolarization. Despite the diverse voltage-dependent gating behaviors observed in CNBD channels, a unified mechanistic framework remains lacking. Here, we propose an allosteric model for their electromechanical coupling, featuring a single voltage-sensor transition coupled to two distinct conformational coupling modes between voltage-sensing and pore domains. With only three or four free parameters, this model recapitulates the biphasic U-shaped and bell-shaped conductance-voltage relationships commonly seen in CNBD channels. Fluorescence anisotropy-based homo-FRET experiments employing site-specifically incorporated noncanonical amino acids provide further support for the hypothesis, suggesting that the S5 helix movement plays a key role in hyperpolarization-dependent activation, while S4-S6 helix interactions are required for depolarization-dependent gating.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2025,"id":571434,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9506,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":576182,"name":"Gucan Dai","orcid":"0000-0002-4692-4060","position":0,"is_corresponding":true}],"reference_count":64,"raw_metadata":null,"created_at":"2026-07-19T02:57:15.755535Z","pmid":"40766500","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}