{"doi":"10.1101/2023.07.20.549584","title":"A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data","abstract":"Abstract MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of &gt;60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbial-derived metabolites and relative producers, without a priori knowledge, will vastly enhance the understanding of microorganisms’ role in ecology and human health.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2023,"id":392498,"datarank":0.3155737033590901,"base_score":1.791759469228055,"endowment":1.791759469228055,"self_citation_contribution":0.26876392038420827,"citation_network_contribution":0.046809782974881815,"self_endowment_contribution":0.26876392038420827,"citer_contribution":0.046809782974881815,"corpus_percentile":null,"corpus_rank":null,"citation_count":5,"citer_count":3,"citers_with_citation_signal":3,"citers_with_endowment":3,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9353,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":255044,"name":"Robin Schmid","orcid":"0000-0003-0922-3887","position":1,"is_corresponding":false},{"id":242696,"name":"Anelize Bauermeister","orcid":"0000-0001-9731-6172","position":2,"is_corresponding":false},{"id":811552,"name":"Paulo Wender Portal Gomes","orcid":"0000-0001-5478-2448","position":3,"is_corresponding":false},{"id":235435,"name":"Andrés Mauricio Caraballo‐Rodríguez","orcid":"0000-0001-5499-2728","position":4,"is_corresponding":false},{"id":1161288,"name":"Yasin El Abiead","orcid":"0000-0003-4392-7706","position":5,"is_corresponding":false},{"id":251370,"name":"Allegra T. Aron","orcid":"0000-0002-9596-021X","position":6,"is_corresponding":false},{"id":109150,"name":"Emily C. Gentry","orcid":"0000-0002-0016-8132","position":7,"is_corresponding":false},{"id":983400,"name":"Jasmine Zemlin","orcid":"0000-0003-0713-9956","position":8,"is_corresponding":false},{"id":225251,"name":"Michael J. Meehan","orcid":"0000-0002-6836-0294","position":9,"is_corresponding":false},{"id":413184,"name":"Nicole E. Avalon","orcid":"0000-0003-3588-892X","position":10,"is_corresponding":false},{"id":422475,"name":"Robert H. Cichewicz","orcid":"0000-0003-0744-4117","position":11,"is_corresponding":false},{"id":1166064,"name":"Ekaterina Buzun","orcid":"0000-0002-1223-1290","position":12,"is_corresponding":false},{"id":1166065,"name":"Marvic Carrillo Terrazas","orcid":"0000-0002-8830-5161","position":13,"is_corresponding":false},{"id":1030873,"name":"Chia-Yun Hsu","orcid":"0000-0002-5283-1020","position":14,"is_corresponding":false},{"id":1166066,"name":"Renee Oles","orcid":"0000-0001-5945-0215","position":15,"is_corresponding":false},{"id":1166067,"name":"Adriana Vasquez Ayala","orcid":"0000-0001-6917-3581","position":16,"is_corresponding":false},{"id":1166068,"name":"Jiaqi Zhao","orcid":"0000-0002-0601-3406","position":17,"is_corresponding":false},{"id":280720,"name":"Hiutung Chu","orcid":"0000-0001-7489-0446","position":18,"is_corresponding":false},{"id":1161290,"name":"Mirte C. M. Kuijpers","orcid":"0000-0002-5409-2129","position":19,"is_corresponding":false},{"id":881071,"name":"Sara L. Jackrel","orcid":"0000-0001-7326-4996","position":20,"is_corresponding":false},{"id":109170,"name":"Fidele Tugizimana","orcid":"0000-0001-8172-6599","position":21,"is_corresponding":false},{"id":1166069,"name":"Lerato Nephali","orcid":"0000-0002-0347-3984","position":22,"is_corresponding":false},{"id":1166070,"name":"Ian A. Dubery","orcid":"0000-0002-9079-4769","position":23,"is_corresponding":false},{"id":1166071,"name":"Ntakadzeni Edwin Madala","orcid":"0000-0001-7390-2118","position":24,"is_corresponding":false},{"id":1166072,"name":"Eduarda Antunes Moreira","orcid":"0000-0002-2299-8049","position":25,"is_corresponding":false},{"id":630665,"name":"Letícia V. Costa‐Lotufo","orcid":"0000-0003-1861-5153","position":26,"is_corresponding":false},{"id":261984,"name":"Norberto Peporine Lopes","orcid":"0000-0002-8159-3658","position":27,"is_corresponding":false},{"id":1166073,"name":"Paula Rezende‐Teixeira","orcid":"0000-0003-4138-8040","position":28,"is_corresponding":false},{"id":1166074,"name":"Paula C. Jimenez","orcid":"0000-0002-5244-9761","position":29,"is_corresponding":false},{"id":239566,"name":"Bipin Rimal","orcid":"0000-0001-6528-5156","position":30,"is_corresponding":false},{"id":239569,"name":"Andrew D. Patterson","orcid":"0000-0003-2073-0070","position":31,"is_corresponding":false},{"id":611934,"name":"Matthew F. Traxler","orcid":"0000-0001-8430-595X","position":32,"is_corresponding":false},{"id":1166075,"name":"Rita de Cássia Pessotti","orcid":"0000-0003-0805-8613","position":33,"is_corresponding":false},{"id":1166076,"name":"Daniel Alvarado-Villalobos","orcid":"0000-0001-6983-0019","position":34,"is_corresponding":false},{"id":711333,"name":"Giselle Tamayo‐Castillo","orcid":"0000-0002-4912-8895","position":35,"is_corresponding":false},{"id":1166077,"name":"Priscila Chaverrí","orcid":"0000-0002-8486-6033","position":36,"is_corresponding":false},{"id":1166078,"name":"Efraín Escudero‐Leyva","orcid":"0000-0003-4440-4296","position":37,"is_corresponding":false},{"id":399471,"name":"Luis-Manuel Quirós-Guerrero","orcid":"0000-0002-1630-8697","position":38,"is_corresponding":false},{"id":398220,"name":"Alexandre Bory","orcid":"0000-0001-5222-6894","position":39,"is_corresponding":false},{"id":1166537,"name":"Juliette Joubert","orcid":null,"position":40,"is_corresponding":false},{"id":741819,"name":"Adriano Rutz","orcid":"0000-0003-0443-9902","position":41,"is_corresponding":false},{"id":261992,"name":"Jean‐Luc Wolfender","orcid":"0000-0002-0125-952X","position":42,"is_corresponding":false},{"id":105854,"name":"Pierre‐Marie Allard","orcid":"0000-0003-3389-2191","position":43,"is_corresponding":false},{"id":1166079,"name":"Andreas Sichert","orcid":"0000-0002-1386-5535","position":44,"is_corresponding":false},{"id":1023914,"name":"Sammy Pontrelli","orcid":"0000-0001-6265-8842","position":45,"is_corresponding":false},{"id":557231,"name":"Benjamin Pullman","orcid":"0000-0002-2733-4911","position":46,"is_corresponding":false},{"id":84381,"name":"Nuno Bandeira","orcid":"0000-0001-8385-3655","position":47,"is_corresponding":false},{"id":108307,"name":"William H. Gerwick","orcid":"0000-0003-1403-4458","position":48,"is_corresponding":false},{"id":1166080,"name":"Katia Gindro","orcid":"0000-0003-4344-1853","position":49,"is_corresponding":false},{"id":1166081,"name":"Josep Massana‐Codina","orcid":"0000-0001-9439-1249","position":50,"is_corresponding":false},{"id":867058,"name":"Berenike Wagner","orcid":"0000-0002-7691-7531","position":51,"is_corresponding":false},{"id":1166082,"name":"Karl Forchhammer","orcid":"0000-0003-3199-8101","position":52,"is_corresponding":false},{"id":105842,"name":"Daniel Petras","orcid":"0000-0002-6561-3022","position":53,"is_corresponding":false},{"id":1166083,"name":"Nicole Aiosa","orcid":"0000-0002-4219-5470","position":54,"is_corresponding":false},{"id":105860,"name":"Neha Garg","orcid":"0000-0002-2760-7123","position":55,"is_corresponding":false},{"id":378408,"name":"Manuel Liebeke","orcid":"0000-0002-2339-1409","position":56,"is_corresponding":false},{"id":1166084,"name":"Patric Bourceau","orcid":"0000-0002-2150-9194","position":57,"is_corresponding":false},{"id":105865,"name":"Kyo Bin Kang","orcid":"0000-0003-3290-1017","position":58,"is_corresponding":false},{"id":1166085,"name":"Henna Gadhavi","orcid":"0009-0007-8317-9729","position":59,"is_corresponding":false},{"id":1161131,"name":"Luiz Pedro S. de Carvalho","orcid":"0000-0003-2875-4552","position":60,"is_corresponding":false},{"id":626567,"name":"Mariana Silva dos Santos","orcid":"0000-0003-2404-8490","position":61,"is_corresponding":false},{"id":663645,"name":"Alicia Isabel Pérez‐Lorente","orcid":"0000-0002-9625-8203","position":62,"is_corresponding":false},{"id":630678,"name":"Carlos Molina‐Santiago","orcid":"0000-0002-1131-8917","position":63,"is_corresponding":false},{"id":630683,"name":"Diego Romero","orcid":"0000-0002-2052-6515","position":64,"is_corresponding":false},{"id":91599,"name":"Raimo Franke","orcid":"0000-0002-5407-5521","position":65,"is_corresponding":false},{"id":703168,"name":"Mark Brönstrup","orcid":"0000-0002-8971-7045","position":66,"is_corresponding":false},{"id":1166086,"name":"Arturo Vera-Ponce de León","orcid":"0000-0003-4085-5700","position":67,"is_corresponding":false},{"id":106773,"name":"Phillip B. Pope","orcid":"0000-0002-2067-4059","position":68,"is_corresponding":false},{"id":106763,"name":"Sabina Leanti La Rosa","orcid":"0000-0003-3527-8101","position":69,"is_corresponding":false},{"id":1166087,"name":"Giorgia La Barbera","orcid":"0000-0003-0583-906X","position":70,"is_corresponding":false},{"id":1166088,"name":"Henrik M. Roager","orcid":"0000-0002-2504-8313","position":71,"is_corresponding":false},{"id":1122523,"name":"Martin Frederik Laursen","orcid":"0000-0001-6017-7121","position":72,"is_corresponding":false},{"id":741818,"name":"Fabian Hammerle","orcid":"0000-0002-4553-823X","position":73,"is_corresponding":false},{"id":741822,"name":"Bianka Siewert","orcid":"0000-0002-4910-1756","position":74,"is_corresponding":false},{"id":741821,"name":"Ursula Peintner","orcid":"0000-0001-5388-4266","position":75,"is_corresponding":false},{"id":1166089,"name":"Cuauhtemoc Licona-Cassani","orcid":"0000-0002-1877-3875","position":76,"is_corresponding":false},{"id":1166538,"name":"Lorena Rodriguez-Orduña","orcid":null,"position":77,"is_corresponding":false},{"id":1166539,"name":"Evelyn Rampler","orcid":"0000-0002-9429-7663","position":78,"is_corresponding":false},{"id":1166090,"name":"Felina Hildebrand","orcid":"0000-0002-6946-6744","position":79,"is_corresponding":false},{"id":1166091,"name":"Gunda Koellensperger","orcid":"0000-0002-1460-4919","position":80,"is_corresponding":false},{"id":1166092,"name":"Harald Schoeny","orcid":"0000-0001-8696-481X","position":81,"is_corresponding":false},{"id":1166093,"name":"Katharina Hohenwallner","orcid":"0000-0002-4957-1344","position":82,"is_corresponding":false},{"id":1166094,"name":"Lisa Panzenboeck","orcid":"0000-0001-6694-3499","position":83,"is_corresponding":false},{"id":255025,"name":"Rachel Gregor","orcid":"0000-0003-4071-9573","position":84,"is_corresponding":false},{"id":261988,"name":"Ellis C. O’Neill","orcid":"0000-0002-5941-2806","position":85,"is_corresponding":false},{"id":839445,"name":"Eve Tallulah Roxborough","orcid":"0000-0002-4573-1670","position":86,"is_corresponding":false},{"id":1166095,"name":"Jane Odoi","orcid":"0000-0002-5591-6249","position":87,"is_corresponding":false},{"id":1166096,"name":"Nicole J. Bale","orcid":"0000-0001-9118-3890","position":88,"is_corresponding":false},{"id":1166097,"name":"Su Ding","orcid":"0000-0001-6213-3982","position":89,"is_corresponding":false},{"id":1166098,"name":"Jaap S. Sinninghe Damsté","orcid":"0000-0002-8683-1854","position":90,"is_corresponding":false},{"id":539432,"name":"Xue Li Guan","orcid":"0000-0002-5189-8178","position":91,"is_corresponding":false},{"id":1066731,"name":"Jerry Cui","orcid":"0000-0002-8165-7340","position":92,"is_corresponding":false},{"id":430537,"name":"Kou‐San Ju","orcid":"0000-0003-0438-6740","position":93,"is_corresponding":false},{"id":261971,"name":"Denise Brentan Silva","orcid":"0000-0003-0872-2756","position":94,"is_corresponding":false},{"id":1166540,"name":"Fernanda Motta Ribeiro Silva","orcid":null,"position":95,"is_corresponding":false},{"id":1166099,"name":"Gilvan Ferreira da Silva","orcid":"0000-0003-2828-8299","position":96,"is_corresponding":false},{"id":1166100,"name":"Héctor H. F. Koolen","orcid":"0000-0002-0181-348X","position":97,"is_corresponding":false},{"id":553979,"name":"Carlismari O. Grundmann","orcid":"0000-0003-2799-3527","position":98,"is_corresponding":false},{"id":389954,"name":"Jason A. Clement","orcid":"0009-0009-4762-1983","position":99,"is_corresponding":false},{"id":363451,"name":"Simone Zuffa","orcid":"0000-0001-7237-3402","position":0,"is_corresponding":true}],"reference_count":56,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-07-19T01:18:56.730121Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}