{"doi":"10.1101/2023.06.18.23291088","title":"Next-Generation Phenotyping: Introducing PhecodeX for Enhanced Discovery Research in Medical Phenomics","abstract":"Abstract Summary Phecodes are widely-used and easily adapted phenotypes based on International Classification of Diseases (ICD) codes. The current version of phecodes (v1.2) was designed primarily to study common/complex diseases diagnosed in adults. Here we present phecodeX, an expanded version of phecodes with a revised structure and 1,761 new codes. PhecodeX adds granularity to phenotypes in key disease domains that are under-represented in the current phecode structure-including infectious disease, pregnancy, congenital anomalies, and neonatology- and is a more robust representation of the medical phenome for global use in discovery research. Availability and implementation phecodeX is available at https://github.com/PheWAS/phecodeX . Contact lisa.bastarache@vumc.org Supplementary information Supplemental Tables 1-4, Bastarache_bioRxiv_20220907.pdf WC-1999","journal":"medRxiv","year":2023,"id":392458,"datarank":0.3199756402172076,"base_score":1.791759469228055,"endowment":1.791759469228055,"self_citation_contribution":0.26876392038420827,"citation_network_contribution":0.05121171983299932,"self_endowment_contribution":0.26876392038420827,"citer_contribution":0.05121171983299932,"corpus_percentile":46.94824785333024,"corpus_rank":6859,"citation_count":5,"citer_count":4,"citers_with_citation_signal":3,"citers_with_endowment":3,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.6384,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1027187,"name":"William W. Stead","orcid":"0000-0002-5048-9540","position":1,"is_corresponding":false},{"id":400979,"name":"Ida Aka","orcid":null,"position":2,"is_corresponding":false},{"id":1166510,"name":"AL Barnado","orcid":null,"position":3,"is_corresponding":false},{"id":1166511,"name":"JA Bastarache","orcid":null,"position":4,"is_corresponding":false},{"id":308559,"name":"Elly Brokamp","orcid":"0000-0002-2722-2856","position":5,"is_corresponding":false},{"id":1166512,"name":"MS Campbell Joseph","orcid":null,"position":6,"is_corresponding":false},{"id":1166010,"name":"R. Carroll","orcid":"0000-0003-0193-2531","position":7,"is_corresponding":false},{"id":109762,"name":"Jeffrey A. Goldstein","orcid":"0000-0002-4086-057X","position":8,"is_corresponding":false},{"id":616268,"name":"Anna Lewis","orcid":"0000-0002-1274-386X","position":9,"is_corresponding":false},{"id":1166513,"name":"BA Malow","orcid":null,"position":10,"is_corresponding":false},{"id":405424,"name":"Jonathan D. Mosley","orcid":"0000-0001-6421-2887","position":11,"is_corresponding":false},{"id":501473,"name":"Travis Osterman","orcid":"0000-0002-2841-8121","position":12,"is_corresponding":false},{"id":1166514,"name":"D.A. Padovani-Claudio","orcid":null,"position":13,"is_corresponding":false},{"id":279182,"name":"Andrea H. Ramirez","orcid":"0000-0002-6460-0182","position":14,"is_corresponding":false},{"id":1166515,"name":"DM Roden","orcid":null,"position":15,"is_corresponding":false},{"id":1166516,"name":"BA Schuler","orcid":null,"position":16,"is_corresponding":false},{"id":249668,"name":"Edward D. Siew","orcid":"0000-0003-1343-8784","position":17,"is_corresponding":false},{"id":104335,"name":"Jennifer M. S. Sucre","orcid":"0000-0002-6613-1439","position":18,"is_corresponding":false},{"id":434143,"name":"Isaac Thomsen","orcid":"0000-0001-9240-0164","position":19,"is_corresponding":false},{"id":1166517,"name":"R. Tinker","orcid":null,"position":20,"is_corresponding":false},{"id":235375,"name":"Sara L. Van Driest","orcid":"0000-0003-2580-1405","position":21,"is_corresponding":false},{"id":260167,"name":"Colin G. Walsh","orcid":"0000-0002-9379-2056","position":22,"is_corresponding":false},{"id":1166518,"name":"JL Warner","orcid":null,"position":23,"is_corresponding":false},{"id":1166519,"name":"QS Wells","orcid":null,"position":24,"is_corresponding":false},{"id":384865,"name":"Lee Wheless","orcid":"0000-0002-8162-5971","position":25,"is_corresponding":false},{"id":31022,"name":"Lisa Bastarache","orcid":null,"position":26,"is_corresponding":false},{"id":1166509,"name":"MM Shuey","orcid":null,"position":0,"is_corresponding":true}],"reference_count":20,"raw_metadata":null,"created_at":"2026-07-19T01:18:56.730121Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}