{"doi":"10.1101/2023.03.21.23286947","title":"VMAP: Vaginal Microbiome Atlas During Pregnancy","abstract":"The vaginal microbiome has been shown to be associated with pregnancy outcomes including preterm birth (PTB) risk. Here we present VMAP: Vaginal Microbiome Atlas during Pregnancy (http://vmapapp.org), an application to visualize features of 3,909 vaginal microbiome samples of 1,416 pregnant individuals from 11 studies, aggregated from raw public and newly generated sequences via an open-source tool, MaLiAmPi. Our visualization tool (http://vmapapp.org) includes microbial features such as various measures of diversity, VALENCIA community state types (CST), and composition (via phylotypes and taxonomy). This work serves as a resource for the research community to further analyze and visualize vaginal microbiome data in order to better understand both healthy term pregnancies and those associated with adverse outcomes.","journal":"medRxiv","year":2023,"id":394358,"datarank":0.2633950158541,"base_score":1.3862943611198906,"endowment":1.3862943611198906,"self_citation_contribution":0.20794415416798362,"citation_network_contribution":0.0554508616861164,"self_endowment_contribution":0.20794415416798362,"citer_contribution":0.0554508616861164,"corpus_percentile":41.31662412005879,"corpus_rank":7587,"citation_count":3,"citer_count":3,"citers_with_citation_signal":3,"citers_with_endowment":3,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.6146,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":559243,"name":"Tomiko Oskotsky","orcid":"0000-0001-7393-5120","position":1,"is_corresponding":false},{"id":21592,"name":"Boris Oskotsky","orcid":"0000-0002-9364-7051","position":2,"is_corresponding":false},{"id":2807,"name":"Camilla Wibrand","orcid":"0000-0002-8821-2619","position":3,"is_corresponding":false},{"id":812645,"name":"Alennie Roldan","orcid":"0000-0002-8186-5318","position":4,"is_corresponding":false},{"id":70899,"name":"Alice Tang","orcid":"0000-0003-4745-0714","position":5,"is_corresponding":false},{"id":817776,"name":"Connie Ha","orcid":"0000-0003-1357-6431","position":6,"is_corresponding":false},{"id":40913,"name":"Ronald J. Wong","orcid":"0000-0003-1205-6936","position":7,"is_corresponding":false},{"id":433550,"name":"Samuel S. Minot","orcid":"0000-0003-1639-3905","position":8,"is_corresponding":false},{"id":56514,"name":"Gaia Andreoletti","orcid":"0000-0002-0452-0009","position":9,"is_corresponding":false},{"id":52431,"name":"Idit Kosti","orcid":"0000-0003-2212-5472","position":10,"is_corresponding":false},{"id":463547,"name":"Kevin R. Theis","orcid":"0000-0002-8690-7599","position":11,"is_corresponding":false},{"id":1038417,"name":"Sherrianne Ng","orcid":"0000-0002-4262-7587","position":12,"is_corresponding":false},{"id":402952,"name":"Yun Sok Lee","orcid":"0000-0001-7967-4734","position":13,"is_corresponding":false},{"id":1038418,"name":"Patricia Díaz-Gimeno","orcid":"0000-0003-0031-7545","position":14,"is_corresponding":false},{"id":236466,"name":"Phillip R. Bennett","orcid":"0000-0002-6253-4919","position":15,"is_corresponding":false},{"id":36313,"name":"David A. MacIntyre","orcid":"0000-0002-4186-5567","position":16,"is_corresponding":false},{"id":233436,"name":"Susan V. Lynch","orcid":"0000-0001-5695-7336","position":17,"is_corresponding":false},{"id":236857,"name":"Roberto Romero","orcid":"0000-0002-4448-5121","position":18,"is_corresponding":false},{"id":236858,"name":"Adi L. Tarca","orcid":"0000-0003-1712-7588","position":19,"is_corresponding":false},{"id":17735,"name":"David K. Stevenson","orcid":"0000-0002-7127-0281","position":20,"is_corresponding":false},{"id":226949,"name":"Nima Aghaeepour","orcid":"0000-0002-6117-8764","position":21,"is_corresponding":false},{"id":226874,"name":"Jonathan L. Golob","orcid":"0000-0003-0009-5815","position":22,"is_corresponding":false},{"id":2824,"name":"Marina Sirota","orcid":"0000-0002-7246-6083","position":23,"is_corresponding":false},{"id":1038410,"name":"Antonio Párraga-Leo","orcid":"0000-0001-9496-6989","position":0,"is_corresponding":true}],"reference_count":18,"raw_metadata":null,"created_at":"2026-07-19T01:19:14.590635Z","pmid":"36993193","pmcid":"PMC10055588","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}