{"doi":"10.1101/2023.01.09.23284337","title":"SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 Antigen Self Tests","abstract":"Widespread use of over-the-counter rapid diagnostic tests for SARS-CoV-2 has led to a decrease in availability of clinical samples for viral genomic surveillance. As an alternative sample source, we evaluated RNA isolated from BinaxNOW swabs stored at ambient temperature for SARS-CoV-2 rRT-PCR and full viral genome sequencing. 81 of 103 samples (78.6%) yielded detectable RNA, and 46 of 57 samples (80.7 %) yielded complete genome sequences. Our results illustrate that SARS-CoV-2 RNA extracted from used Binax test swabs provides an important opportunity for improving SARS-CoV-2 genomic surveillance, evaluating transmission clusters, and monitoring within-patient evolution.","journal":"medRxiv","year":2023,"id":402314,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9261,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":955459,"name":"Ludy Registre Carmola","orcid":null,"position":1,"is_corresponding":false},{"id":955461,"name":"Ethan Wang","orcid":null,"position":2,"is_corresponding":false},{"id":314483,"name":"Leda Bassit","orcid":"0000-0001-9894-5587","position":3,"is_corresponding":false},{"id":402297,"name":"Anuradha Rao","orcid":"0000-0001-6600-0677","position":4,"is_corresponding":false},{"id":756449,"name":"Morgan Greenleaf","orcid":"0000-0003-1569-5696","position":5,"is_corresponding":false},{"id":645798,"name":"Julie Sullivan","orcid":"0000-0002-5681-747X","position":6,"is_corresponding":false},{"id":24174,"name":"Greg S. Martin","orcid":"0000-0002-9684-7593","position":7,"is_corresponding":false},{"id":337554,"name":"Wilbur A. Lam","orcid":"0000-0002-0325-7990","position":8,"is_corresponding":false},{"id":168177,"name":"Jesse J. Waggoner","orcid":"0000-0002-0244-5957","position":9,"is_corresponding":false},{"id":244979,"name":"Anne Piantadosi","orcid":"0000-0002-5942-1534","position":10,"is_corresponding":false},{"id":804922,"name":"Phuong-Vi Nguyen","orcid":null,"position":0,"is_corresponding":true}],"reference_count":19,"raw_metadata":null,"created_at":"2026-07-19T01:20:27.903246Z","pmid":"36712132","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}