{"doi":"10.1101/2022.08.18.504436","title":"Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets","abstract":"Abstract Highly multiplexed tissue imaging (MTI) are powerful spatial proteomics technologies that enable in situ single-cell characterization of tissues. However, analysis and visualization of MTI datasets remains challenging, and we developed the Galaxy-ME software hub to address this challenge. Galaxy-ME is a web-based, interactive software hub that enables end-to-end analysis and visualization of MTI datasets and is accessible to everyone. To demonstrate its utility, Galaxy-ME was used to analyze datasets obtained from multiple MTI assays in both normal and cancerous tissues. Galaxy-ME is a publicly available web resource.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2022,"id":297754,"datarank":0.32958368660043297,"base_score":2.1972245773362196,"endowment":2.1972245773362196,"self_citation_contribution":0.32958368660043297,"citation_network_contribution":0.0,"self_endowment_contribution":0.32958368660043297,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":8,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9486,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2022-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":986281,"name":"Cameron Watson","orcid":"0000-0002-6942-2469","position":1,"is_corresponding":false},{"id":225868,"name":"Qiang Gu","orcid":"0000-0002-2606-0461","position":2,"is_corresponding":false},{"id":621268,"name":"Daniel Persson","orcid":"0000-0003-0940-109X","position":3,"is_corresponding":false},{"id":524118,"name":"Luke Sargent","orcid":"0000-0003-1327-6535","position":4,"is_corresponding":false},{"id":459620,"name":"Yu‐An Chen","orcid":"0000-0001-7228-4696","position":5,"is_corresponding":false},{"id":24150,"name":"Jia‐Ren Lin","orcid":"0000-0003-4702-7705","position":6,"is_corresponding":false},{"id":567552,"name":"Shamilene Sivagnanam","orcid":"0000-0001-5966-1522","position":7,"is_corresponding":false},{"id":842251,"name":"Florian Wünnemann","orcid":"0000-0002-0978-6076","position":8,"is_corresponding":false},{"id":621265,"name":"Ajit J. Nirmal","orcid":"0000-0003-4139-0618","position":9,"is_corresponding":false},{"id":225142,"name":"Koei Chin","orcid":"0000-0001-8061-7462","position":10,"is_corresponding":false},{"id":1857,"name":"Heidi S. Feiler","orcid":"0000-0002-6580-3547","position":11,"is_corresponding":false},{"id":90464,"name":"Lisa M. Coussens","orcid":"0000-0003-2389-1865","position":12,"is_corresponding":false},{"id":28660,"name":"Denis Schapiro","orcid":"0000-0002-9391-5722","position":14,"is_corresponding":false},{"id":30115,"name":"Björn Grüning","orcid":"0000-0002-3079-6586","position":15,"is_corresponding":false},{"id":24147,"name":"Peter K. Sorger","orcid":"0000-0002-3364-1838","position":16,"is_corresponding":false},{"id":483573,"name":"Artem Sokolov","orcid":"0000-0002-8056-0504","position":17,"is_corresponding":false},{"id":225102,"name":"Jeremy Goecks","orcid":"0000-0002-4583-5226","position":18,"is_corresponding":false},{"id":567551,"name":"Allison Creason","orcid":"0000-0001-5724-1276","position":0,"is_corresponding":true}],"reference_count":44,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-07-19T00:31:31.270564Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}