{"doi":"10.1101/2020.11.13.382119","title":"ISA API: An open platform for interoperable life science experimental metadata","abstract":"<h4>Background</h4> The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used set of open-source community specifications and software tools for enabling discovery, exchange and publication of metadata from experiments in the life sciences. The original ISA software suite provided a set of user-facing Java tools for creating and manipulating the information structured in ISA-Tab – a now widely used tabular format. To make the ISA framework more accessible to machines and enable programmatic manipulation of experiment metadata, a JSON serialization ISA-JSON was developed. <h4>Results</h4> In this work, we present the ISA API, a Python library for the creation, editing, parsing, and validating of ISA-Tab and ISA-JSON formats by using a common data model engineered as Python object classes. We describe the ISA API feature set, early adopters and its growing user community. <h4>Conclusions</h4> The ISA API provides users with rich programmatic metadata handling functionality to support automation, a common interface and an interoperable medium between the two ISA formats, as well as with other life science data formats required for depositing data in public databases.","journal":null,"year":2020,"id":776,"datarank":0.24141568686511508,"base_score":1.6094379124341003,"endowment":1.6094379124341003,"self_citation_contribution":0.24141568686511508,"citation_network_contribution":0.0,"self_endowment_contribution":0.24141568686511508,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":4,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.1226,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-11-16","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":7594,"name":"Keeva Cochrane","orcid":"0000-0001-7961-0474","position":1,"is_corresponding":false},{"id":7595,"name":"Robert P. Davey","orcid":"0000-0002-5589-7754","position":2,"is_corresponding":false},{"id":7596,"name":"Anthony Etuk","orcid":"0000-0001-8320-660X","position":3,"is_corresponding":false},{"id":286,"name":"Alejandra Noemí González Beltrán","orcid":"0000-0003-3499-8262","position":4,"is_corresponding":false},{"id":7597,"name":"Kenneth Haug","orcid":"0000-0003-3168-4145","position":5,"is_corresponding":false},{"id":288,"name":"Allyson L. Lister","orcid":"0000-0002-7702-4495","position":6,"is_corresponding":false},{"id":7598,"name":"Martin Larralde","orcid":"0000-0002-3947-4444","position":7,"is_corresponding":false},{"id":7599,"name":"Thomas N. Lawson","orcid":"0000-0002-5915-7980","position":8,"is_corresponding":false},{"id":7600,"name":"Alice Minotto","orcid":"0000-0002-1670-1675","position":9,"is_corresponding":false},{"id":7601,"name":"Pablo Moreno","orcid":"0000-0002-9856-1679","position":10,"is_corresponding":false},{"id":7602,"name":"Venkata Chandrasekhar Nainala","orcid":"0000-0002-2564-3243","position":11,"is_corresponding":false},{"id":7603,"name":"Claire O’Donovan","orcid":"0000-0001-8051-7429","position":12,"is_corresponding":false},{"id":7604,"name":"Luca Pireddu","orcid":"0000-0002-4663-5613","position":13,"is_corresponding":false},{"id":7605,"name":"Pierrick Roger","orcid":"0000-0001-8177-4873","position":14,"is_corresponding":false},{"id":7606,"name":"Felix Shaw","orcid":"0000-0001-9649-5906","position":15,"is_corresponding":false},{"id":73,"name":"Christoph Steinbeck","orcid":"0000-0001-6966-0814","position":16,"is_corresponding":false},{"id":7607,"name":"Ralf J. M. Weber","orcid":"0000-0002-8796-4771","position":17,"is_corresponding":false},{"id":290,"name":"Susanna‐Assunta Sansone","orcid":"0000-0001-5306-5690","position":18,"is_corresponding":false},{"id":289,"name":"Rocca-Serra, Philippe","orcid":"0000-0001-9853-5668","position":19,"is_corresponding":false},{"id":5712,"name":"David Johnson","orcid":"0000-0002-2323-6847","position":0,"is_corresponding":true}],"reference_count":83,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}