{"doi":"10.1101/2020.07.04.158063","title":"Somatic variant analysis of linked-reads sequencing data with Lancet","abstract":"Abstract Summary We present a new version of the popular somatic variant caller, Lancet, that supports the analysis of linked-reads sequencing data. By seamlessly integrating barcodes and haplotype read assignments within the colored De Bruijn graph local-assembly framework, Lancet computes a barcode-aware coverage and identifies variants that disagree with the local haplotype structure. Availability and Implementation Lancet is implemented in C++ and is available for academic and non-commercial research purposes as an open-source package at https://github.com/nygenome/lancet . Contact gnarzisi@nygenome.org","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2020,"id":130310,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":0,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9499,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":391319,"name":"Kanika Arora","orcid":"0000-0001-9537-8708","position":1,"is_corresponding":false},{"id":87010,"name":"André Corvelo","orcid":"0000-0003-0989-7806","position":2,"is_corresponding":false},{"id":391916,"name":"Minita Shah","orcid":null,"position":3,"is_corresponding":false},{"id":391320,"name":"Jennifer Shelton","orcid":"0000-0003-1429-6845","position":4,"is_corresponding":false},{"id":6273,"name":"Michael C. Zody","orcid":"0000-0001-6594-7199","position":5,"is_corresponding":false},{"id":391321,"name":"Giuseppe Narzisi","orcid":"0000-0003-1118-8849","position":6,"is_corresponding":false},{"id":391318,"name":"Rajeeva Musunuri","orcid":"0000-0001-5671-1766","position":0,"is_corresponding":true}],"reference_count":14,"raw_metadata":null,"created_at":"2026-07-18T23:15:53.196774Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}