{"doi":"10.1101/2020.03.17.996033","title":"TRTools: a toolkit for genome-wide analysis of tandem repeats","abstract":"Abstract Summary A rich set of tools have recently been developed for performing genome-wide genotyping of tandem repeats (TRs). However, standardized tools for downstream analysis of these results are lacking. To facilitate TR analysis applications, we present TRTools, a Python library and a suite of command-line tools for filtering, merging, and quality control of TR genotype files. TRTools utilizes an internal harmonization module making it compatible with outputs from a wide range of TR genotypers. Availability TRTools is freely available at https://github.com/gymreklab/TRTools . Contact mgymrek@eng.ucsd.edu Supplementary information Supplementary data are available at bioRxiv .","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2020,"id":120263,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":11,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9551,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":314346,"name":"Jonathan Margoliash","orcid":"0000-0001-7292-8076","position":1,"is_corresponding":false},{"id":314347,"name":"Neha Pusarla","orcid":"0000-0001-6742-0542","position":2,"is_corresponding":false},{"id":314348,"name":"Shubham Saini","orcid":"0000-0002-1900-0284","position":3,"is_corresponding":false},{"id":314349,"name":"Richard Yanicky","orcid":"0000-0001-9418-4813","position":4,"is_corresponding":false},{"id":314350,"name":"Melissa Gymrek","orcid":"0000-0002-6086-3903","position":5,"is_corresponding":false},{"id":24592,"name":"Nima Mousavi","orcid":"0000-0003-1926-8982","position":0,"is_corresponding":true}],"reference_count":7,"raw_metadata":null,"created_at":"2026-07-18T23:14:33.640077Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}