{"doi":"10.1101/2020.03.02.968818","title":"Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia","abstract":"Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia's first case of COVID-2019.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2020,"id":119000,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":31,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9135,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":552654,"name":"Jennifer A. Bohl","orcid":"0000-0001-6057-1858","position":1,"is_corresponding":false},{"id":552655,"name":"Sreyngim Lay","orcid":"0000-0002-2388-8511","position":2,"is_corresponding":false},{"id":552656,"name":"Sophana Chea","orcid":"0000-0003-3187-3691","position":3,"is_corresponding":false},{"id":553340,"name":"Sovann Ly","orcid":null,"position":4,"is_corresponding":false},{"id":553341,"name":"Yi Sengdoeurn","orcid":null,"position":5,"is_corresponding":false},{"id":553342,"name":"Heng Seng","orcid":null,"position":6,"is_corresponding":false},{"id":553343,"name":"Chan Vuthy","orcid":null,"position":7,"is_corresponding":false},{"id":311356,"name":"Katrina Kalantar","orcid":"0000-0003-0281-4625","position":8,"is_corresponding":false},{"id":311355,"name":"Vida Ahyong","orcid":"0000-0002-8632-9629","position":9,"is_corresponding":false},{"id":74077,"name":"Michelle Tan","orcid":"0000-0002-3202-2023","position":10,"is_corresponding":false},{"id":552657,"name":"Jonathan Sheu","orcid":"0000-0001-8249-4013","position":11,"is_corresponding":false},{"id":552658,"name":"Cristina M. Tato","orcid":"0000-0002-0614-756X","position":12,"is_corresponding":false},{"id":107235,"name":"Joseph L. DeRisi","orcid":"0000-0002-4611-9205","position":13,"is_corresponding":false},{"id":552659,"name":"Laurence Baril","orcid":"0000-0003-2346-883X","position":14,"is_corresponding":false},{"id":552660,"name":"Veasna Duong","orcid":"0000-0003-0353-1678","position":15,"is_corresponding":false},{"id":475226,"name":"Philippe Dussart","orcid":"0000-0002-1931-3037","position":16,"is_corresponding":false},{"id":366888,"name":"Erik A. Karlsson","orcid":"0000-0001-6004-5671","position":17,"is_corresponding":false},{"id":344856,"name":"Jessica E. Manning","orcid":"0000-0003-0232-2196","position":0,"is_corresponding":true}],"reference_count":10,"raw_metadata":null,"created_at":"2026-07-18T23:14:03.409507Z","pmid":"32511296","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}