{"doi":"10.1101/2020.01.05.895003","title":"Dense cellular segmentation for EM using 2D-3D neural network ensembles","abstract":"ABSTRACT Cell biologists can now build 3D models from segmentations of electron microscopy (EM) images, but accurate manual segmentation of densely-packed organelles across gigavoxel image volumes is infeasible. Here, we introduce 2D-3D neural network ensembles that produce dense cellular segmentations at scale, with accuracy levels that outperform baseline methods and approach those of human annotators.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2020,"id":121919,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":5,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9406,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2020-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":562661,"name":"Zeyad A.S. Emam","orcid":null,"position":1,"is_corresponding":false},{"id":562662,"name":"Adam B. Anderson","orcid":null,"position":2,"is_corresponding":false},{"id":382768,"name":"Maria A. Aronova","orcid":"0000-0002-3688-515X","position":3,"is_corresponding":false},{"id":373890,"name":"Brian Storrie","orcid":"0000-0002-4644-2504","position":4,"is_corresponding":false},{"id":382766,"name":"Irina D. Pokrovskaya","orcid":"0009-0009-6491-3179","position":5,"is_corresponding":false},{"id":290697,"name":"Richard D. Leapman","orcid":"0000-0002-8575-4084","position":6,"is_corresponding":false},{"id":562141,"name":"Matthew D. Guay","orcid":"0000-0001-6715-9743","position":0,"is_corresponding":true}],"reference_count":18,"raw_metadata":null,"created_at":"2026-07-18T23:14:46.979435Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}