{"doi":"10.1101/134023","title":"taxMaps - Ultra-comprehensive and highly accurate taxonomic classification of short-read data in reasonable time","abstract":"High-throughput sequencing is a revolutionary technology for the analysis of metagenomic samples. However, querying large volumes of reads against comprehensive DNA/RNA databases in a sensitive manner can be compute-intensive. Here, we present taxMaps, a highly efficient, sensitive and fully scalable taxonomic classification tool, capable of delivering classification accuracy comparable to that of BLASTn, but at up to 3 orders of magnitude less computational cost. taxMaps is freely available for academic and non-commercial research purposes at https://github.com/nygenome/taxmaps .","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2017,"id":10449,"datarank":0.20794415416798362,"base_score":1.3862943611198906,"endowment":1.3862943611198906,"self_citation_contribution":0.20794415416798362,"citation_network_contribution":0.0,"self_endowment_contribution":0.20794415416798362,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":3,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.0463,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2017-05-05","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":87011,"name":"Wayne E. Clarke","orcid":"0000-0003-2471-0712","position":1,"is_corresponding":false},{"id":11495,"name":"Nicolas Robine","orcid":"0000-0001-5698-8183","position":2,"is_corresponding":false},{"id":6273,"name":"Michael C. Zody","orcid":"0000-0001-6594-7199","position":3,"is_corresponding":false},{"id":87010,"name":"André Corvelo","orcid":"0000-0003-0989-7806","position":0,"is_corresponding":true}],"reference_count":22,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}