{"doi":"10.1101/041384","title":"Diffusion pseudotime robustly reconstructs lineage branching","abstract":"Single-cell gene expression profiles of differentiating cells encode their intrinsic latent temporal order. We describe an efficient way to robustly estimate this order according to a diffusion pseudotime , which measures transitions on all length scales between cells using diffusion-like random walks. This allows us to identify cells that undergo branching decisions or are in metastable states, and thereby genes differentially regulated at these states.","journal":"bioRxiv (Cold Spring Harbor Laboratory)","year":2016,"id":11340,"datarank":2.0409803793312133,"base_score":4.02535169073515,"endowment":4.02535169073515,"self_citation_contribution":0.6038027536102726,"citation_network_contribution":1.4371776257209408,"self_endowment_contribution":0.6038027536102726,"citer_contribution":1.4371776257209408,"corpus_percentile":null,"corpus_rank":null,"citation_count":55,"citer_count":61,"citers_with_citation_signal":44,"citers_with_endowment":44,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.0627,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2016-02-29","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":3572,"name":"Maren Büttner","orcid":"0000-0002-6189-3792","position":1,"is_corresponding":false},{"id":3587,"name":"Francesca Finotello","orcid":"0000-0003-0712-4658","position":2,"is_corresponding":false},{"id":29,"name":"Florian Buettner","orcid":"0000-0001-5587-6761","position":3,"is_corresponding":false},{"id":42,"name":"Fabian Joachim Theis","orcid":"0000-0002-2419-1943","position":4,"is_corresponding":false},{"id":18244,"name":"Florian Wolf","orcid":"0000-0001-7251-2951","position":5,"is_corresponding":false},{"id":29455,"name":"Laleh Haghverdi","orcid":"0000-0001-9280-9170","position":0,"is_corresponding":true}],"reference_count":26,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}