{"doi":"10.1093/ve/veac088","title":"SPREAD 4: online visualisation of pathogen phylogeographic reconstructions","abstract":"Phylogeographic analyses aim to extract information about pathogen spread from genomic data, and visualising spatio-temporal reconstructions is a key aspect of this process. Here we present SPREAD 4, a feature-rich web-based application that visualises estimates of pathogen dispersal resulting from Bayesian phylogeographic inference using BEAST on a geographic map, offering zoom-and-filter functionality and smooth animation over time. SPREAD 4 takes as input phylogenies with both discrete and continuous location annotation and offers customised visualisation as well as generation of publication-ready figures. SPREAD 4 now features account-based storage and easy sharing of visualisations by means of unique web addresses. SPREAD 4 is intuitive to use and is available online at https://spreadviz.org, with an accompanying web page containing answers to frequently asked questions at https://beast.community/spread4.","journal":"Virus Evolution","year":2022,"id":246705,"datarank":0.5456379239589579,"base_score":3.6375861597263857,"endowment":3.6375861597263857,"self_citation_contribution":0.5456379239589579,"citation_network_contribution":0.0,"self_endowment_contribution":0.5456379239589579,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":37,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9464,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2022-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":884000,"name":"Filip Bielejec","orcid":null,"position":1,"is_corresponding":false},{"id":884001,"name":"Juan Monetta","orcid":null,"position":2,"is_corresponding":false},{"id":178763,"name":"Simon Dellicour","orcid":"0000-0001-9558-1052","position":3,"is_corresponding":false},{"id":34991,"name":"Andrew Rambaut","orcid":"0000-0003-4337-3707","position":4,"is_corresponding":false},{"id":32104,"name":"Marc A. Suchard","orcid":"0000-0001-9818-479X","position":5,"is_corresponding":false},{"id":88111,"name":"Guy Baele","orcid":"0000-0002-1915-7732","position":6,"is_corresponding":false},{"id":36828,"name":"Philippe Lemey","orcid":"0000-0003-2826-5353","position":7,"is_corresponding":false},{"id":883394,"name":"Kanika D Nahata","orcid":"0000-0002-5727-338X","position":0,"is_corresponding":true}],"reference_count":35,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-07-19T00:23:48.622830Z","pmid":"36325034","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}