{"doi":"10.1093/nar/gkt961","title":"EBI metagenomics—a new resource for the analysis and archiving of metagenomic data","abstract":"Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data. In response to these challenges, we have developed a new metagenomics resource (http://www.ebi.ac.uk/metagenomics/) that allows users to easily submit raw nucleotide reads for functional and taxonomic analysis by a state-of-the-art pipeline, and have them automatically stored (together with descriptive, standards-compliant metadata) in the European Nucleotide Archive.","journal":"Nucleic Acids Research","year":2013,"id":2487,"datarank":0.7603356303330349,"base_score":5.0689042022202315,"endowment":5.0689042022202315,"self_citation_contribution":0.7603356303330349,"citation_network_contribution":0.0,"self_endowment_contribution":0.7603356303330349,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":158,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.3701,"is_oa":true,"file_count":0,"downloads":12,"has_version_chain":false,"published_date":"2013-10-27","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":29835,"name":"Matthew Corbett","orcid":null,"position":1,"is_corresponding":false},{"id":29836,"name":"Hubert Denise","orcid":"0000-0001-9862-5890","position":2,"is_corresponding":false},{"id":29837,"name":"Matthew Fraser","orcid":"0000-0003-2318-9080","position":3,"is_corresponding":false},{"id":29838,"name":"Philip Jones","orcid":null,"position":6,"is_corresponding":false},{"id":29839,"name":"Rasko Leinonen","orcid":"0000-0002-2639-7187","position":7,"is_corresponding":false},{"id":29840,"name":"Craig McAnulla","orcid":null,"position":8,"is_corresponding":false},{"id":284,"name":"Eamonn Maguire","orcid":"0000-0002-7277-7834","position":9,"is_corresponding":false},{"id":29841,"name":"John Maslen","orcid":null,"position":10,"is_corresponding":false},{"id":29842,"name":"Alex Mitchell","orcid":"0000-0001-8655-7966","position":11,"is_corresponding":false},{"id":29843,"name":"Gift Nuka","orcid":null,"position":12,"is_corresponding":false},{"id":29844,"name":"Arnaud Oisel","orcid":null,"position":13,"is_corresponding":false},{"id":29845,"name":"Sebastien Pesseat","orcid":"0000-0003-3245-7921","position":14,"is_corresponding":false},{"id":29846,"name":"Rajesh Radhakrishnan","orcid":"0000-0001-7170-699X","position":15,"is_corresponding":false},{"id":5765,"name":"Philippe Rocca-Serra","orcid":null,"position":16,"is_corresponding":false},{"id":29847,"name":"Maxim Scheremetjew","orcid":"0000-0002-7458-3072","position":17,"is_corresponding":false},{"id":5930,"name":"Peter Sterk","orcid":"0000-0003-1668-7778","position":18,"is_corresponding":false},{"id":29848,"name":"Daniel Vaughan","orcid":null,"position":19,"is_corresponding":false},{"id":11687,"name":"Guy Cochrane","orcid":"0000-0001-7954-7057","position":20,"is_corresponding":false},{"id":5911,"name":"Dawn Field","orcid":null,"position":21,"is_corresponding":false},{"id":29849,"name":"Matthew J. Corbett","orcid":null,"position":23,"is_corresponding":false},{"id":286,"name":"Alejandra Noemí González Beltrán","orcid":"0000-0003-3499-8262","position":24,"is_corresponding":false},{"id":15063,"name":"Christopher I. Hunter","orcid":"0000-0002-1335-0881","position":25,"is_corresponding":false},{"id":289,"name":"Rocca-Serra, Philippe","orcid":"0000-0001-9853-5668","position":26,"is_corresponding":false},{"id":29850,"name":"David Vaughan","orcid":"0000-0002-4374-3758","position":27,"is_corresponding":false},{"id":290,"name":"Susanna‐Assunta Sansone","orcid":"0000-0001-5306-5690","position":28,"is_corresponding":false},{"id":29591,"name":"Sarah Hunter","orcid":"0000-0003-2453-0770","position":0,"is_corresponding":true}],"reference_count":37,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}