{"doi":"10.1093/nar/gkad960","title":"WikiPathways 2024: next generation pathway database","abstract":"<jats:title>Abstract</jats:title>\n               <jats:p>WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.</jats:p>","journal":"Nucleic Acids Research","year":2024,"id":602437,"datarank":0.9206590581129352,"base_score":6.137727054086234,"endowment":6.137727054086234,"self_citation_contribution":0.9206590581129352,"citation_network_contribution":0.0,"self_endowment_contribution":0.9206590581129352,"citer_contribution":0.0,"corpus_percentile":78.0,"corpus_rank":2880,"citation_count":462,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":null,"is_data_producer":false,"deposit_databanks":null,"is_oa":false,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":null,"fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1202803,"name":"Hasan Balcı","orcid":"0000-0001-8319-7758","position":1,"is_corresponding":false},{"id":246271,"name":"Kristina Hanspers","orcid":"0000-0001-5410-599X","position":2,"is_corresponding":false},{"id":598523,"name":"Susan L. Coort","orcid":"0000-0003-1224-9690","position":3,"is_corresponding":false},{"id":35993,"name":"Marvin Martens","orcid":"0000-0003-2230-0840","position":4,"is_corresponding":false},{"id":1545047,"name":"Denise N Slenter","orcid":"0000-0001-8449-1318","position":5,"is_corresponding":false},{"id":2831,"name":"Friederike Ehrhart","orcid":"0000-0002-7770-620X","position":6,"is_corresponding":false},{"id":649661,"name":"Daniela Digles","orcid":"0000-0001-5934-3559","position":7,"is_corresponding":false},{"id":7104,"name":"Andra Waagmeester","orcid":"0000-0001-9773-4008","position":8,"is_corresponding":false},{"id":1545048,"name":"Isabel Wassink","orcid":"0009-0007-2045-4009","position":9,"is_corresponding":false},{"id":2484,"name":"Tooba Abbassi-Daloii","orcid":"0000-0002-4904-3269","position":10,"is_corresponding":false},{"id":648658,"name":"Élisson Nogueira Lopes","orcid":"0000-0003-1661-6304","position":11,"is_corresponding":false},{"id":1056503,"name":"Aishwarya Iyer","orcid":"0000-0002-2630-223X","position":12,"is_corresponding":false},{"id":1545049,"name":"Javier Millán Acosta","orcid":"0000-0002-4166-7093","position":13,"is_corresponding":false},{"id":1545050,"name":"Lars G Willighagen","orcid":"0000-0002-4751-4637","position":14,"is_corresponding":false},{"id":30049,"name":"Kozo Nishida","orcid":"0000-0001-8501-7319","position":15,"is_corresponding":false},{"id":468929,"name":"Anders Riutta","orcid":"0000-0002-4693-0591","position":16,"is_corresponding":false},{"id":1545051,"name":"Helena Basaric","orcid":null,"position":17,"is_corresponding":false},{"id":2494,"name":"Chris T. Evelo","orcid":"0000-0002-5301-3142","position":18,"is_corresponding":false},{"id":2493,"name":"Egon L. Willighagen","orcid":"0000-0001-7542-0286","position":19,"is_corresponding":false},{"id":234826,"name":"Martina Kutmon","orcid":"0000-0002-7699-8191","position":20,"is_corresponding":false},{"id":246283,"name":"Alexander R. Pico","orcid":"0000-0001-5706-2163","position":21,"is_corresponding":false},{"id":996227,"name":"Ayushi Agrawal","orcid":"0000-0003-2940-8926","position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"has_enrichment":true,"resolved":true,"title":"WikiPathways 2024: next generation pathway database","abstract":"<jats:title>Abstract</jats:title>\n               <jats:p>WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.</jats:p>","is_dataset_classified":null,"base_score":6.102558594613569,"endowment":6.102558594613569,"datacite_reuse_total":0,"file_count":0,"downloads":0,"views":0,"has_version_chain":false,"is_dataset":false,"is_oa":false,"pmid":"37941138","pmcid":"PMC10767877","openalex_id":"https://openalex.org/W4388539880","authors":[],"funders":[{"funder_name":"National Institute of General Medical Sciences","grant_id":"GM103504","title":null},{"funder_name":"National Institute of General Medical Sciences","grant_id":"GM100039","title":null},{"funder_name":"ZonMw","grant_id":"10430012010015","title":null},{"funder_name":"NWO","grant_id":"VHP4Safety NWA-ORC 1292.19.272","title":null},{"funder_name":"European Union’s Horizon 2020","grant_id":"863059","title":"Food Nutrition Security Cloud"},{"funder_name":"European Union’s Horizon 2020","grant_id":"814572","title":"Innovative Nanoinformatics models and tools: towards a Solid, verified and Integrated Approach to Predictive (eco)Toxicology (NanoSolveIT)"},{"funder_name":"European Union’s Horizon 2020","grant_id":"814425","title":"Risk Governance of Nanotechnology"},{"funder_name":"European Union’s Horizon 2020","grant_id":"825575","title":"European Joint Programme on Rare Diseases"},{"funder_name":"NIGMS NIH HHS","grant_id":"P41 GM103504","title":null},{"funder_name":"NIGMS NIH HHS","grant_id":"R01 GM100039","title":null},{"funder_name":"National Institutes of Health","grant_id":"2P41GM103504-06","title":"Core_Training"},{"funder_name":"National Institutes of Health","grant_id":"5U24CA210954-04","title":"iPGDAC, An Integrative Proteogenomic Data Analysis Center for CPTAC"},{"funder_name":"Netherlands Organisation for Scientific Research (NWO)","grant_id":"650.002.002","title":"ODEX4all Open Discovery and Exchange for all"},{"funder_name":"European Commission","grant_id":"115191","title":"The Open Pharmacological Concepts Triple Store"},{"funder_name":"National Institutes of Health","grant_id":"5R01GM100039-09","title":"The WikiPathways Project: At the Intersection of Big Data and Researcher Knowledge"},{"funder_name":"ELIXIR Europe","grant_id":"","title":null}],"total_grants":16,"fwci":41.8082,"citation_percentile":0.99932655,"influential_citations":0,"citation_trend":[{"year":2023,"count":5},{"year":2024,"count":114},{"year":2025,"count":207},{"year":2026,"count":120}],"oa_status":"gold","license":"cc-by","oa_locations":[{"url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad960/52947360/gkad960.pdf","host_type":"journal"},{"url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad960/52947360/gkad960.pdf","host_type":"publisher"},{"url":"https://academic.oup.com/nar/article-pdf/52/D1/D679/55040703/gkad960.pdf","host_type":"publisher"},{"url":"https://doi.org/10.1093/nar/gkad960","host_type":"journal"},{"url":"https://pubmed.ncbi.nlm.nih.gov/37941138","host_type":"repository"},{"url":"https://cris.maastrichtuniversity.nl/en/publications/11a13106-8c47-4079-8e9c-6b6355a1a60b","host_type":"repository"},{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10767877","host_type":"repository"},{"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10767877/pdf/gkad960.pdf","host_type":"repository"},{"url":"https://europepmc.org/articles/PMC10767877","host_type":"Europe_PMC"},{"url":"https://europepmc.org/articles/PMC10767877?pdf=render","host_type":"Europe_PMC"},{"url":"http://dx.doi.org/10.1093/nar/gkad960","host_type":""},{"url":"https://ucrisportal.univie.ac.at/de/publications/a1055e7f-fb0c-4444-9f9e-3cabfb99f07f","host_type":""},{"url":"https://phaidra.univie.ac.at/o:2175601","host_type":""},{"url":"https://hdl.handle.net/11353/10.2175601","host_type":""}],"fields_of_study":["Bioinformatics and Genomic Networks","Wikis in Education and Collaboration","Biomedical Text Mining and Ontologies","0206 medical engineering","02 engineering and technology","Databases, Factual"],"mesh_terms":["Databases, Factual"],"keywords":["Biology","Computational biology","Database","Genetics","Computer science","Databases","106005 Bioinformatik","Databases, Factual","Database Issue","106005 Bioinformatics","Factual"],"sdg_mappings":[{"sdg_number":0,"sdg_label":"Industry, innovation and infrastructure"}],"linked_datasets":[],"clinical_trials":[],"software_tools":[],"database_accessions":[],"source":"live","citation_network_status":"fetched"},"created_at":"2026-07-29T19:23:37.481273Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}