{"doi":"10.1093/jhered/esac056","title":"A draft reference genome of the Vernal Pool Fairy Shrimp,<i>Branchinecta lynchi</i>","abstract":"We present the reference genome of the Vernal Pool Fairy Shrimp Branchinecta lynchi. This branchiopod crustacean is endemic to California's freshwater ephemeral ponds. It faces enormous habitat loss and fragmentation as urbanization and agriculture have fundamentally changed the vernal pool landscape over the past 3 centuries. The assembled genome consists of 22 chromosome-length scaffolds that account for 96.85% of the total sequence. One hundred and ninety-five unscaffolded contigs comprise the rest of the genome's 575.6 Mb length. The genome is substantially complete with a BUSCO score of 90.0%. There is no immediately identifiable sex chromosome, typical for this class of organism. This new resource will permit researchers to better understand the adaptive capacity of this imperiled species, as well as answer lingering questions about anostracan physiology, sex determination, and development.","journal":"Journal of Heredity","year":2022,"id":287749,"datarank":0.21530884296143304,"base_score":1.3862943611198906,"endowment":1.3862943611198906,"self_citation_contribution":0.20794415416798362,"citation_network_contribution":0.0073646887934494185,"self_endowment_contribution":0.20794415416798362,"citer_contribution":0.0073646887934494185,"corpus_percentile":36.82215517908254,"corpus_rank":8167,"citation_count":3,"citer_count":1,"citers_with_citation_signal":1,"citers_with_endowment":1,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.9308,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2022-01-01","fair_score":62.5,"fair_percentile":81.0149801284011,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":929688,"name":"Andrea Schreier","orcid":"0000-0002-2241-3119","position":1,"is_corresponding":false},{"id":92291,"name":"Merly Escalona","orcid":"0000-0003-0213-4777","position":2,"is_corresponding":false},{"id":929687,"name":"Amanda J. Finger","orcid":"0000-0003-3850-3685","position":3,"is_corresponding":false},{"id":539976,"name":"Shannon E K Joslin","orcid":null,"position":4,"is_corresponding":false},{"id":108056,"name":"Ruta Sahasrabudhe","orcid":"0000-0002-3285-6845","position":5,"is_corresponding":false},{"id":730420,"name":"Mohan P A Marimuthu","orcid":"0000-0001-6121-3286","position":6,"is_corresponding":false},{"id":730421,"name":"Oanh Nguyen","orcid":"0000-0003-1492-2084","position":7,"is_corresponding":false},{"id":911241,"name":"Noravit Chumchim","orcid":"0000-0003-1139-9427","position":8,"is_corresponding":false},{"id":930258,"name":"Emily Reister Morris","orcid":null,"position":9,"is_corresponding":false},{"id":567305,"name":"Hayley Mangelson","orcid":"0000-0002-1520-9099","position":10,"is_corresponding":false},{"id":929686,"name":"Joshua M. Hull","orcid":"0000-0002-0937-2535","position":11,"is_corresponding":false},{"id":929685,"name":"Shannon Rose Kieran Blair","orcid":"0000-0002-2855-6487","position":0,"is_corresponding":true}],"reference_count":26,"raw_metadata":null,"created_at":"2026-07-19T00:30:01.051685Z","pmid":"36222891","pmcid":"PMC10019022","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":94.4444,"fair_a":68.75,"fair_i":0.0,"fair_r":41.6667,"fair_zscore":1.1103,"fair_rationale":{"fair_score":62.5,"has_llm":true,"taxonomy_version":"fair_taxonomy_v5","dimensions":{"F":{"name":"Findable","score":94.44,"criteria":[{"key":"f_dataset_pid","label":"Persistent identifier for the data","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"Data generated for this study are available under NCBI BioProject PRJNA720569.","grounded":true,"rationale":"The paper provides a persistent identifier (NCBI BioProject accession PRJNA720569) for the study's data.","anchors":["RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit","RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier'","FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'"],"scored":true,"signal":null},{"key":"f_repository_named","label":"Named repository","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"Data generated for this study are available under NCBI BioProject PRJNA720569.","grounded":true,"rationale":"The paper names NCBI (National Center for Biotechnology Information) as the repository holding the data.","anchors":["RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed (","NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived","NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten"],"scored":true,"signal":null},{"key":"f_data_availability_statement","label":"Data-availability statement","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"Data generated for this study are available under NCBI BioProject PRJNA720569.","grounded":true,"rationale":"The data availability statement points to a repository record with an accession number (PRJNA720569), which is Colavizza category 3.","anchors":["Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li","Springer Nature research data policy — Data Availability Statements: standard statement templat","RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes"],"scored":false,"signal":null},{"key":"f_discovery_metadata","label":"Description of the dataset as an object","kind":"llm","weight":2.0,"fraction":1.0,"verdict":"yes","evidence":"Table 2. 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