{"doi":"10.1093/dnares/dst013","title":"High-Resolution Mapping of In vivo Genomic Transcription Factor Binding Sites Using In situ DNase I Footprinting and ChIP-seq","abstract":null,"journal":"DNA Research","year":2013,"id":45656,"datarank":1.1507404515994488,"base_score":3.5263605246161616,"endowment":3.5263605246161616,"self_citation_contribution":0.5289540786924243,"citation_network_contribution":0.6217863729070244,"self_endowment_contribution":0.5289540786924243,"citer_contribution":0.6217863729070244,"corpus_percentile":null,"corpus_rank":null,"citation_count":33,"citer_count":28,"citers_with_citation_signal":23,"citers_with_endowment":23,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":null,"is_data_producer":false,"deposit_databanks":null,"is_oa":false,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":null,"fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":9737,"name":"K. Nakamura","orcid":"0000-0003-3302-7325","position":1,"is_corresponding":false},{"id":212989,"name":"T. Kurata","orcid":null,"position":2,"is_corresponding":false},{"id":160269,"name":"T. Sakamoto","orcid":null,"position":3,"is_corresponding":false},{"id":212990,"name":"J. L. Hobman","orcid":null,"position":4,"is_corresponding":false},{"id":212991,"name":"N. Ogasawara","orcid":null,"position":5,"is_corresponding":false},{"id":212992,"name":"T. Oshima","orcid":null,"position":6,"is_corresponding":false},{"id":212993,"name":"S. Ishikawa","orcid":null,"position":7,"is_corresponding":false},{"id":212988,"name":"O. Chumsakul","orcid":null,"position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"has_enrichment":true,"base_score":3.5263605246161616,"endowment":3.5263605246161616,"datacite_reuse_total":0,"file_count":0,"downloads":0,"views":0,"has_version_chain":false,"is_dataset":false,"is_oa":false,"pmid":"23580539","pmcid":"PMC3738160","openalex_id":"https://openalex.org/W2160413464","authors":[],"funders":[{"funder_name":"Biotechnology and Biological Sciences Research Council","grant_id":"BB/H531586/1","title":null}],"total_grants":1,"fwci":0.8849,"citation_percentile":0.7464493,"influential_citations":1,"citation_trend":[{"year":2014,"count":1},{"year":2015,"count":2},{"year":2016,"count":3},{"year":2017,"count":4},{"year":2018,"count":1},{"year":2019,"count":1},{"year":2020,"count":1},{"year":2021,"count":3},{"year":2022,"count":5},{"year":2023,"count":2},{"year":2024,"count":7},{"year":2025,"count":1},{"year":2026,"count":2}],"oa_status":"gold","license":"cc-by-nc","oa_locations":[{"url":"https://academic.oup.com/dnaresearch/article-pdf/20/4/325/1010561/dst013.pdf","host_type":"journal"},{"url":"https://academic.oup.com/dnaresearch/article-pdf/20/4/325/1010561/dst013.pdf","host_type":"GOLD"},{"url":"https://academic.oup.com/dnaresearch/article-pdf/20/4/325/1010561/dst013.pdf","host_type":"publisher"},{"url":"http://academic.oup.com/dnaresearch/article-pdf/20/4/325/1010561/dst013.pdf","host_type":"publisher"},{"url":"https://doi.org/10.1093/dnares/dst013","host_type":"journal"},{"url":"https://pubmed.ncbi.nlm.nih.gov/23580539","host_type":"repository"},{"url":"http://dnaresearch.oxfordjournals.org/content/20/4/325","host_type":"repository"},{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3738160","host_type":"repository"},{"url":"https://nottingham-repository.worktribe.com/output/714463","host_type":"repository"},{"url":"https://europepmc.org/articles/PMC3738160","host_type":"Europe_PMC"},{"url":"https://europepmc.org/articles/PMC3738160?pdf=render","host_type":"Europe_PMC"}],"fields_of_study":["RNA and protein synthesis mechanisms","Genomics and Chromatin Dynamics","Bacterial Genetics and Biotechnology","Biology","Medicine","Bacillus subtilis","Bacterial Proteins","Binding Sites","Chromatin Immunoprecipitation","Conserved Sequence","DNA Footprinting","DNA-Binding Proteins","Deoxyribonuclease I","High-Throughput Nucleotide Sequencing","Molecular Sequence Data","Nucleotide Motifs","Protein Binding","Sequence Analysis, DNA","Transcription Factors"],"mesh_terms":["Bacillus subtilis","Bacterial Proteins","Binding Sites","Deoxyribonuclease I","DNA-Binding Proteins","Molecular Sequence Data","Protein Binding","Transcription Factors","Conserved Sequence","Sequence Analysis, DNA","DNA Footprinting","Chromatin Immunoprecipitation","High-Throughput Nucleotide Sequencing","Nucleotide Motifs"],"keywords":["Footprinting","DNA footprinting","Biology","Binding site","DNA binding site","DNA","Deoxyribonuclease I","Transcription factor","Computational biology","Genetics","DNA-binding protein","Promoter","Molecular biology","Gene","Gene expression","Base sequence","Bacillus subtilis","Chip-seq","Abrb","Gef-seq"],"sdg_mappings":[],"linked_datasets":[],"clinical_trials":[],"software_tools":[],"database_accessions":[{"name":"bioproject"},{"name":"gen"}],"source":"live","citation_network_status":"fetched"},"created_at":"2026-07-03T23:27:06.299416Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}