{"doi":"10.1093/bioinformatics/bty633","title":"ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R","abstract":"<h4>Summary</h4>After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses. Efforts have been put to improve efficiency, flexibility, support for 'big data' (R's long vectors), ease of use and quality check before a new release. These changes will hopefully make ape a useful software for the study of biodiversity and evolution in a context of increasing data quantity.<h4>Availability and implementation</h4>ape is distributed through the Comprehensive R Archive Network: http://cran.r-project.org/package=ape. Further information may be found at http://ape-package.ird.fr/.","journal":"Bioinformatics","year":2018,"id":11607,"datarank":1.3690275092215738,"base_score":9.126850061477157,"endowment":9.126850061477157,"self_citation_contribution":1.3690275092215738,"citation_network_contribution":0.0,"self_endowment_contribution":1.3690275092215738,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":9198,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.0611,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2018-07-17","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":92487,"name":"Klaus Schliep","orcid":"0000-0003-2941-0161","position":1,"is_corresponding":false},{"id":92486,"name":"Emmanuel Paradis","orcid":"0000-0003-3092-2199","position":0,"is_corresponding":true}],"reference_count":5,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}