{"doi":"10.1093/bioinformatics/btr548","title":"ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression","abstract":"

Summary

We introduce ProfileChaser, a web server that allows for querying the Gene Expression Omnibus based on genome-wide patterns of differential expression. Using a novel, content-based approach, ProfileChaser retrieves expression profiles that match the differentially regulated transcriptional programs in a user-supplied experiment. This analysis identifies statistical links to similar expression experiments from the vast array of publicly available data on diseases, drugs, phenotypes and other experimental conditions.

Availability

http://profilechaser.stanford.edu

Contact

abutte@stanford.edu

Supplementary information

Supplementary data are available at Bioinformatics online.","journal":"Bioinformatics","year":2011,"id":8280,"datarank":0.5676284450877392,"base_score":3.784189633918261,"endowment":3.784189633918261,"self_citation_contribution":0.5676284450877392,"citation_network_contribution":0.0,"self_endowment_contribution":0.5676284450877392,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":43,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.0517,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2011-10-03","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":50,"name":"Rong Chen","orcid":"0000-0001-6322-0340","position":1,"is_corresponding":false},{"id":3041,"name":"Alexander A. Morgan","orcid":null,"position":2,"is_corresponding":false},{"id":48,"name":"Joel T. Dudley","orcid":"0000-0002-7036-6492","position":3,"is_corresponding":false},{"id":72955,"name":"Rohan Mallelwar","orcid":null,"position":4,"is_corresponding":false},{"id":51,"name":"Atul Janardhan Butte","orcid":"0000-0002-7433-2740","position":5,"is_corresponding":false},{"id":3038,"name":"Jesse M. Engreitz","orcid":"0000-0002-5754-1719","position":0,"is_corresponding":true}],"reference_count":13,"raw_metadata":null,"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}