{"doi":"10.1093/bioinformatics/btp101","title":"ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks","abstract":"We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally organized GO/pathway term network. It can analyze one or compare two lists of genes and comprehensively visualizes functionally grouped terms. A one-click update option allows ClueGO to automatically download the most recent GO/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in.","journal":"Bioinformatics","year":2009,"id":569,"datarank":16.731122703735466,"base_score":8.79920924224139,"endowment":8.79920924224139,"self_citation_contribution":1.3198813863362089,"citation_network_contribution":15.411241317399256,"self_endowment_contribution":1.3198813863362089,"citer_contribution":15.411241317399256,"corpus_percentile":88.9,"corpus_rank":1972,"citation_count":6628,"citer_count":183,"citers_with_citation_signal":183,"citers_with_endowment":183,"datacite_reuse_total":0,"is_dataset":false,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2009-02-23","authors":[{"id":5739,"name":"Bernhard Mlecnik","orcid":"0000-0002-3345-1030","position":1,"is_corresponding":false},{"id":5740,"name":"Hubert Hackl","orcid":"0000-0003-4055-3841","position":2,"is_corresponding":false},{"id":5741,"name":"Pornpimol Charoentong","orcid":"0000-0001-9028-725X","position":3,"is_corresponding":false},{"id":5742,"name":"Marie Tosolini","orcid":"0000-0001-5278-5952","position":4,"is_corresponding":false},{"id":5743,"name":"Amos Kirilovsky","orcid":"0000-0003-0531-5207","position":5,"is_corresponding":false},{"id":5744,"name":"Wolf-Herman Fridman","orcid":null,"position":6,"is_corresponding":false},{"id":5745,"name":"Franck Pagès","orcid":"0000-0002-2083-610X","position":7,"is_corresponding":false},{"id":5746,"name":"Zlatko Trajanoski","orcid":"0000-0002-0636-7351","position":8,"is_corresponding":false},{"id":5747,"name":"Jérôme Galon","orcid":"0000-0001-9635-1339","position":9,"is_corresponding":false},{"id":5748,"name":"Wolf H. Fridman","orcid":"0000-0002-1332-0973","position":10,"is_corresponding":false},{"id":5738,"name":"Gabriela Bindea","orcid":"0000-0001-6013-6645","position":0,"is_corresponding":true}],"reference_count":11,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}