{"doi":"10.1093/bioinformatics/btaf025","title":"tttrlib: modular software for integrating fluorescence spectroscopy, imaging, and molecular modeling","abstract":"SUMMARY: We introduce software for reading, writing and processing fluorescence single-molecule and image spectroscopy data and developing analysis pipelines to unify various spectroscopic analysis tools. Our software can be used for processing multiple experiment types, e.g. for time-resolved single-molecule spectroscopy, laser scanning microscopy, fluorescence correlation spectroscopy and image correlation spectroscopy. The software is file format agnostic and processes multiple time-resolved data formats and outputs. Our software eliminates the need for data conversion and mitigates data archiving issues. AVAILABILITY AND IMPLEMENTATION: tttrlib is available via pip (https://pypi.org/project/tttrlib/) and bioconda while the open-source code is available via GitHub (https://github.com/fluorescence-tools/tttrlib). Presented examples and additional documentation demonstrating how to implement in vitro and live-cell image spectroscopy analysis are available at https://docs.peulen.xyz/tttrlib and https://zenodo.org/records/14002224.","journal":"Bioinformatics","year":2025,"id":516031,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":10,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9516,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":308113,"name":"Katherina Hemmen","orcid":"0000-0003-1852-6513","position":1,"is_corresponding":false},{"id":1380906,"name":"Annemarie Greife","orcid":"0000-0003-1350-9706","position":2,"is_corresponding":false},{"id":682044,"name":"Benjamin Webb","orcid":"0000-0003-3360-4540","position":3,"is_corresponding":false},{"id":480389,"name":"Suren Felekyan","orcid":"0000-0002-0554-4520","position":4,"is_corresponding":false},{"id":91660,"name":"Andrej Săli","orcid":"0000-0003-0435-6197","position":5,"is_corresponding":false},{"id":308115,"name":"Claus A. M. Seidel","orcid":"0000-0002-5171-149X","position":6,"is_corresponding":false},{"id":308112,"name":"Hugo Sanabria","orcid":"0000-0001-7068-6827","position":7,"is_corresponding":false},{"id":1380907,"name":"Katrin G. Heinze","orcid":"0000-0003-2372-6800","position":8,"is_corresponding":false},{"id":308111,"name":"Thomas-Otavio Peulen","orcid":"0000-0001-8478-9755","position":0,"is_corresponding":true}],"reference_count":67,"raw_metadata":null,"created_at":"2026-07-19T02:48:44.647022Z","pmid":"39836627","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}