{"doi":"10.1093/bioinformatics/btab459","title":"JBrowseR: an R interface to the JBrowse 2 genome browser","abstract":"MOTIVATION: Genome browsers are an essential tool in genome analysis. Modern genome browsers enable complex and interactive visualization of a wide variety of genomic data modalities. While such browsers are very powerful, they can be challenging to configure and program for bioinformaticians lacking expertise in web development. RESULTS: We have developed an R package that provides an interface to the JBrowse 2 genome browser. The package can be used to configure and customize the browser entirely with R code. The browser can be deployed from the R console, or embedded in Shiny applications or R Markdown documents. AVAILABILITY AND IMPLEMENTATION: JBrowseR is available for download from CRAN, and the source code is openly available from the Github repository at https://github.com/GMOD/JBrowseR/.","journal":"Bioinformatics","year":2021,"id":171757,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":26,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9597,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":706666,"name":"Garrett Stevens","orcid":"0000-0002-9781-5323","position":1,"is_corresponding":false},{"id":584246,"name":"Colin Diesh","orcid":"0000-0003-2629-7570","position":2,"is_corresponding":false},{"id":707170,"name":"Peter Xie","orcid":null,"position":3,"is_corresponding":false},{"id":706667,"name":"Teresa De Jesus Martinez","orcid":"0000-0002-1947-9539","position":4,"is_corresponding":false},{"id":19093,"name":"Robert Buels","orcid":"0000-0002-9605-5895","position":5,"is_corresponding":false},{"id":14310,"name":"Lincoln Stein","orcid":"0000-0002-1983-4588","position":6,"is_corresponding":false},{"id":382987,"name":"Ian Holmes","orcid":"0000-0001-7639-5369","position":7,"is_corresponding":false},{"id":258051,"name":"Elliot A. Hershberg","orcid":"0000-0003-2068-3366","position":0,"is_corresponding":true}],"reference_count":9,"raw_metadata":null,"created_at":"2026-07-18T23:46:33.067299Z","pmid":"34196689","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}