{"doi":"10.1093/bib/bbr033","title":"Biological network motif detection: principles and practice","abstract":null,"journal":"Briefings in Bioinformatics","year":2012,"id":623014,"datarank":0.787053610824073,"base_score":5.247024072160486,"endowment":5.247024072160486,"self_citation_contribution":0.787053610824073,"citation_network_contribution":0.0,"self_endowment_contribution":0.787053610824073,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":189,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":null,"is_data_producer":false,"deposit_databanks":null,"is_oa":false,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":null,"fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1609994,"name":"B. Baur","orcid":null,"position":1,"is_corresponding":false},{"id":1609995,"name":"S. Quader","orcid":null,"position":2,"is_corresponding":false},{"id":1609996,"name":"C.-H. Huang","orcid":null,"position":3,"is_corresponding":false},{"id":1386833,"name":"E. Wong","orcid":"0000-0002-9731-8407","position":0,"is_corresponding":false}],"reference_count":0,"raw_metadata":{"has_enrichment":true,"resolved":true,"title":"Biological network motif detection: principles and practice","abstract":"Network motifs are statistically overrepresented sub-structures (sub-graphs) in a network, and have been recognized as 'the simple building blocks of complex networks'. Study of biological network motifs may reveal answers to many important biological questions. The main difficulty in detecting larger network motifs in biological networks lies in the facts that the number of possible sub-graphs increases exponentially with the network or motif size (node counts, in general), and that no known polynomial-time algorithm exists in deciding if two graphs are topologically equivalent. This article discusses the biological significance of network motifs, the motivation behind solving the motif-finding problem, and strategies to solve the various aspects of this problem. A simple classification scheme is designed to analyze the strengths and weaknesses of several existing algorithms. Experimental results derived from a few comparative studies in the literature are discussed, with conclusions that lead to future research directions.","is_dataset_classified":null,"base_score":5.247024072160486,"endowment":5.247024072160486,"datacite_reuse_total":0,"file_count":0,"downloads":0,"views":0,"has_version_chain":false,"is_dataset":false,"is_oa":false,"pmid":"22396487","pmcid":"PMC3294240","openalex_id":"https://openalex.org/W1976722121","authors":[],"funders":[{"funder_name":"NLM NIH HHS","grant_id":"R13-LM008619","title":null}],"total_grants":1,"fwci":4.2591,"citation_percentile":0.95315752,"influential_citations":0,"citation_trend":[{"year":2012,"count":10},{"year":2013,"count":10},{"year":2014,"count":14},{"year":2015,"count":16},{"year":2016,"count":11},{"year":2017,"count":10},{"year":2018,"count":18},{"year":2019,"count":18},{"year":2020,"count":17},{"year":2021,"count":16},{"year":2022,"count":16},{"year":2023,"count":8},{"year":2024,"count":11},{"year":2025,"count":8},{"year":2026,"count":5}],"oa_status":"bronze","license":null,"oa_locations":[{"url":"https://academic.oup.com/bib/article-pdf/13/2/202/703626/bbr033.pdf","host_type":"journal"},{"url":"https://academic.oup.com/bib/article-pdf/13/2/202/703626/bbr033.pdf","host_type":"publisher"},{"url":"http://academic.oup.com/bib/article-pdf/13/2/202/703626/bbr033.pdf","host_type":"publisher"},{"url":"https://doi.org/10.1093/bib/bbr033","host_type":"journal"},{"url":"https://pubmed.ncbi.nlm.nih.gov/22396487","host_type":"repository"},{"url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.731.1848","host_type":""},{"url":"http://europepmc.org/articles/PMC3294240","host_type":"repository"},{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3294240","host_type":"repository"}],"fields_of_study":["Bioinformatics and Genomic Networks","Gene Regulatory Network Analysis","Computational Drug Discovery Methods","Algorithms","Computational Biology","Gene Regulatory Networks","Models, Biological","Protein Interaction Mapping"],"mesh_terms":["Algorithms","Models, Biological","Computational Biology","Protein Interaction Mapping","Gene Regulatory Networks"],"keywords":["Biological network","Motif (music)","Network motif","Computer science","Simple (philosophy)","Theoretical computer science","Exponential growth","Node (physics)","Biological data","Network analysis","Artificial intelligence","Computational biology","Mathematics","Bioinformatics","Biology","Epistemology"],"sdg_mappings":[],"linked_datasets":[],"clinical_trials":[],"software_tools":[],"database_accessions":[],"source":"live","citation_network_status":"fetched"},"created_at":"2026-08-03T21:59:28.070966Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}