{"doi":"10.1038/nmeth.3869","title":"DADA2: High-resolution sample inference from Illumina amplicon data","abstract":"We present the open-source software package DADA2 for modeling and correcting Illumina-sequenced amplicon errors (https://github.com/benjjneb/dada2). DADA2 infers sample sequences exactly and resolves differences of as little as 1 nucleotide. In several mock communities, DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.","journal":"Nature Methods","year":2016,"id":5147,"datarank":16.952046281928897,"base_score":10.471128197856352,"endowment":10.471128197856352,"self_citation_contribution":1.570669229678453,"citation_network_contribution":15.381377052250444,"self_endowment_contribution":1.570669229678453,"citer_contribution":15.381377052250444,"corpus_percentile":98.6,"corpus_rank":126,"citation_count":35281,"citer_count":191,"citers_with_citation_signal":191,"citers_with_endowment":191,"datacite_reuse_total":0,"is_dataset":false,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2016-05-23","authors":[{"id":52082,"name":"Paul J. McMurdie","orcid":"0000-0001-8879-3954","position":1,"is_corresponding":false},{"id":35639,"name":"Michael J. Rosen","orcid":"0000-0002-5149-718X","position":2,"is_corresponding":false},{"id":52083,"name":"Andrew W Han","orcid":null,"position":3,"is_corresponding":false},{"id":52084,"name":"Amy Jo A Johnson","orcid":null,"position":4,"is_corresponding":false},{"id":52086,"name":"Michael Rosen","orcid":"0000-0002-8842-6692","position":6,"is_corresponding":false},{"id":52087,"name":"Andrew Han","orcid":null,"position":7,"is_corresponding":false},{"id":31864,"name":"Susan Holmes","orcid":"0000-0002-2208-8168","position":8,"is_corresponding":false},{"id":52081,"name":"Benjamin J. Callahan","orcid":"0000-0002-8752-117X","position":0,"is_corresponding":true}],"reference_count":23,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}