{"doi":"10.1038/ncomms14836","title":"A BaSiC tool for background and shading correction of optical microscopy images","abstract":"Quantitative analysis of bioimaging data is often skewed by both shading in space and background variation in time. We introduce BaSiC, an image correction method based on low-rank and sparse decomposition which solves both issues. In comparison to existing shading correction tools, BaSiC achieves high-accuracy with significantly fewer input images, works for diverse imaging conditions and is robust against artefacts. Moreover, it can correct temporal drift in time-lapse microscopy data and thus improve continuous single-cell quantification. BaSiC requires no manual parameter setting and is available as a Fiji/ImageJ plugin.","journal":"Nature Communications","year":2017,"id":3303,"datarank":0.8975904421030787,"base_score":5.983936280687191,"endowment":5.983936280687191,"self_citation_contribution":0.8975904421030787,"citation_network_contribution":0.0,"self_endowment_contribution":0.8975904421030787,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":396,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.0452,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2017-06-08","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":35373,"name":"Kurt Thorn","orcid":null,"position":1,"is_corresponding":false},{"id":28747,"name":"Oliver Hilsenbeck","orcid":"0000-0002-9271-8815","position":2,"is_corresponding":false},{"id":35374,"name":"Lichao Wang","orcid":"0000-0002-2099-9064","position":3,"is_corresponding":false},{"id":42,"name":"Fabian Joachim Theis","orcid":"0000-0002-2419-1943","position":4,"is_corresponding":false},{"id":21016,"name":"Carsten Marr","orcid":"0000-0003-2154-4552","position":5,"is_corresponding":false},{"id":35375,"name":"Nassir Navab","orcid":"0000-0002-6032-5611","position":6,"is_corresponding":false},{"id":35376,"name":"Kurt S. Thorn","orcid":"0009-0007-5407-8240","position":7,"is_corresponding":false},{"id":962,"name":"Tingying Peng","orcid":"0000-0002-7881-1749","position":0,"is_corresponding":true}],"reference_count":18,"raw_metadata":{"citation_network_status":"fetched"},"created_at":"2026-03-01T18:20:47.508186Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}