{"doi":"10.1016/j.xpro.2025.104030","title":"Protocol for detecting neuronal subnetworks from in vivo calcium imaging data using multiple clustering algorithms in MATLAB","abstract":"Neuronal subnetworks, defined by co-activation patterns, are fundamental units of brain computation. We provide a step-by-step workflow to detect subnetworks from in vivo calcium imaging data using multiple clustering algorithms in MATLAB. We apply statistical modeling in R to evaluate group-level differences, followed by model selection and bootstrapping for robust estimation. Finally, we use an R Markdown template to generate a structured statistical report. For complete details on the use and execution of this protocol, please refer to Huang et al. 1","journal":"STAR Protocols","year":2025,"id":546059,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":1,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9253,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2025-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":411270,"name":"Gautam Chauhan","orcid":"0009-0002-5075-6167","position":1,"is_corresponding":false},{"id":1437304,"name":"Pei‐Ying Chen","orcid":"0000-0003-2288-3927","position":2,"is_corresponding":false},{"id":1437305,"name":"Esen Tuna","orcid":"0000-0001-6585-4195","position":3,"is_corresponding":false},{"id":227563,"name":"Hui‐Chen Lu","orcid":"0000-0002-6628-7177","position":4,"is_corresponding":false},{"id":443537,"name":"Jui-Yen Huang","orcid":"0000-0003-4745-9970","position":0,"is_corresponding":true}],"reference_count":34,"raw_metadata":null,"created_at":"2026-07-19T02:53:27.751050Z","pmid":"40815566","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}