{"doi":"10.1016/j.xpro.2023.102647","title":"Brain Registration and Evaluation for Zebrafish (BREEZE)-mapping: A pipeline for whole-brain structural and activity analyses","abstract":"Here, we present Brain Registration and Evaluation for Zebrafish (BREEZE)-mapping, a user-friendly pipeline for the registration and analysis of whole-brain images in larval zebrafish. We describe steps for pre-processing, registration, quantification, and visualization of whole-brain phenotypes in zebrafish mutants of genes associated with neurodevelopmental and neuropsychiatric disorders. By utilizing BioImage Suite Web, an open-source software package originally developed for processing human brain imaging data, we provide a highly accessible whole-brain mapping protocol developed for users with general computational proficiency. For complete details on the use and execution of this protocol, please refer to Weinschutz Mendes et al. (2023).1","journal":"STAR Protocols","year":2023,"id":356753,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":3,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.8958,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":1022139,"name":"Uma Neelakantan","orcid":null,"position":1,"is_corresponding":false},{"id":514565,"name":"Cheryl Lacadie","orcid":"0009-0006-3130-4156","position":2,"is_corresponding":false},{"id":1021636,"name":"Tianying Chen","orcid":"0000-0003-4939-8358","position":3,"is_corresponding":false},{"id":1021638,"name":"Brendan Rooney","orcid":"0000-0001-9842-1492","position":4,"is_corresponding":false},{"id":566861,"name":"Yunqing Liu","orcid":"0000-0003-3515-2314","position":5,"is_corresponding":false},{"id":492533,"name":"Weimiao Wu","orcid":"0000-0001-6348-619X","position":6,"is_corresponding":false},{"id":323455,"name":"Zuoheng Wang","orcid":"0000-0002-7251-3687","position":7,"is_corresponding":false},{"id":504538,"name":"Xenophon Papademetris","orcid":"0000-0001-7711-3335","position":8,"is_corresponding":false},{"id":669725,"name":"Ellen J. Hoffman","orcid":"0000-0002-5083-1369","position":9,"is_corresponding":false},{"id":459590,"name":"David Jin","orcid":"0000-0002-1516-8629","position":0,"is_corresponding":true}],"reference_count":26,"raw_metadata":null,"created_at":"2026-07-19T01:13:30.556819Z","pmid":"37897734","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}