{"doi":"10.1016/j.xpro.2023.102291","title":"Quantification of virus-infected cells using RNA FISH-Flow","abstract":"We present a protocol to detect cells that have been infected by RNA viruses. The method, RNA fluorescence in situ hybridization flow cytometry (RNA FISH-Flow), uses 48 fluorescently labeled DNA probes that hybridize in tandem to viral RNA. RNA FISH-Flow probes can be synthesized to match any RNA virus genome, in either sense or anti-sense, enabling detection of genomes or replication intermediates within cells. Flow cytometry enables high-throughput analysis of infection dynamics within a population at the single cell level. For complete details on the use and execution of this protocol, please refer to Warren et al. (2022).1","journal":"STAR Protocols","year":2023,"id":360662,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":9,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9543,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2023-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":552722,"name":"Arturo Barbachano-Guerrero","orcid":"0000-0001-7483-839X","position":1,"is_corresponding":false},{"id":616288,"name":"Devra Huey","orcid":"0000-0001-6363-0999","position":2,"is_corresponding":false},{"id":552717,"name":"Qing Yang","orcid":"0000-0001-9053-3158","position":3,"is_corresponding":false},{"id":552723,"name":"Emma R. Worden-Sapper","orcid":"0000-0002-5823-3566","position":4,"is_corresponding":false},{"id":109882,"name":"Jens H. Kuhn","orcid":"0000-0002-7800-6045","position":5,"is_corresponding":false},{"id":552732,"name":"Sara L. Sawyer","orcid":"0000-0002-6965-1085","position":6,"is_corresponding":false},{"id":868910,"name":"Cody J. Warren","orcid":"0000-0003-4101-2705","position":0,"is_corresponding":true}],"reference_count":8,"raw_metadata":null,"created_at":"2026-07-19T01:14:06.433417Z","pmid":"37209094","pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}