{"doi":"10.1016/j.xpro.2022.101474","title":"OMiCC: An expanded and enhanced platform for meta-analysis of public gene expression data","abstract":"OMiCC (OMics Compendia Commons) is a biologist-friendly web platform that facilitates data reuse and integration. Users can search over 40,000 publicly available gene expression studies, annotate and curate samples, and perform meta-analysis. Since the initial publication, we have incorporated RNA-seq datasets, compendia sharing, RESTful API support, and an additional meta-analysis method based on random effects. Here, we provide a step-by-step guide for using OMiCC. For complete details on the use and execution of this protocol, please refer to Shah et al. (2016).","journal":"STAR Protocols","year":2022,"id":295566,"datarank":0.12200934241035123,"base_score":0.6931471805599453,"endowment":0.6931471805599453,"self_citation_contribution":0.10397207708399181,"citation_network_contribution":0.018037265326359422,"self_endowment_contribution":0.10397207708399181,"citer_contribution":0.018037265326359422,"corpus_percentile":28.6532064670844,"corpus_rank":9224,"citation_count":1,"citer_count":1,"citers_with_citation_signal":1,"citers_with_endowment":1,"datacite_reuse_total":0,"is_dataset":true,"is_dataset_confidence":0.7471,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2022-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":981476,"name":"Yongjian Guo","orcid":"0009-0007-8775-1614","position":1,"is_corresponding":false},{"id":981477,"name":"Kiera L. Vrindten","orcid":"0000-0002-0612-0420","position":2,"is_corresponding":false},{"id":620705,"name":"William W. Lau","orcid":"0000-0003-0190-3722","position":3,"is_corresponding":false},{"id":95756,"name":"Rachel Sparks","orcid":"0000-0001-8216-5084","position":4,"is_corresponding":false},{"id":78353,"name":"John S. Tsang","orcid":"0000-0003-3186-3047","position":5,"is_corresponding":false},{"id":245105,"name":"Candace C. Liu","orcid":"0000-0002-2446-2264","position":0,"is_corresponding":true}],"reference_count":37,"raw_metadata":null,"created_at":"2026-07-19T00:31:08.861377Z","pmid":"35880119","pmcid":"PMC9307621","fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}