{"doi":"10.1016/j.simpa.2021.100136","title":"Ribose-Map: A bioinformatics toolkit for ribonucleotide sequencing experiments","abstract":"Current ribonucleotide mapping software is customized for data generated using only one type of ribonucleotide sequencing technique. To standardize the analysis of ribonucleotide sequencing experiments, we developed the bioinformatics toolkit, Ribose-Map. Through a series of analytical modules, Ribose-Map transforms raw sequencing data into summary datasets and publication-ready visualizations of results, allowing researchers to locate the genomic coordinates of ribonucleotides to single-nucleotide resolution, study the nucleotide sequence context of ribonucleotides, explore their genome-wide distribution, and identify hotspots of ribonucleotide incorporation. Ribose-Map does not require background knowledge of ribonucleotide sequencing analysis and assumes only basic command-line skills. Ribose-Map is available at https://github.com/agombolay/ribose-map.","journal":"Software Impacts","year":2021,"id":207780,"datarank":0.0,"base_score":0.0,"endowment":0.0,"self_citation_contribution":0.0,"citation_network_contribution":0.0,"self_endowment_contribution":0.0,"citer_contribution":0.0,"corpus_percentile":null,"corpus_rank":null,"citation_count":4,"citer_count":0,"citers_with_citation_signal":0,"citers_with_endowment":0,"datacite_reuse_total":0,"is_dataset":false,"is_dataset_confidence":0.9432,"is_data_producer":false,"deposit_databanks":null,"is_oa":true,"file_count":0,"downloads":0,"has_version_chain":false,"published_date":"2021-01-01","fair_score":null,"fair_percentile":null,"algorithm_id":"datarank_citation_only_1hop_v6","ranking_scope":"data_only","authors":[{"id":446052,"name":"Francesca Storici","orcid":"0000-0003-4640-3350","position":1,"is_corresponding":false},{"id":446622,"name":"Alli L. Gombolay","orcid":null,"position":0,"is_corresponding":true}],"reference_count":13,"raw_metadata":null,"created_at":"2026-07-18T23:51:49.715594Z","pmid":null,"pmcid":null,"fwci":null,"citation_percentile":null,"influential_citations":0,"oa_status":null,"license":null,"views":0,"total_file_size_bytes":0,"version_count":0,"fair_f":null,"fair_a":null,"fair_i":null,"fair_r":null,"fair_zscore":null,"fair_rationale":null,"fair_model":null,"fair_agent_version":null,"fair_fulltext_source":null,"fair_has_llm":null,"fair_computed_at":null,"clinical_trials":[],"software_tools":[],"db_accessions":[],"linked_datasets":[],"topics":[]}